ENCFF001RTU

Library Details

Organism: Homo Sapiens
Biosample: liver (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFV
Description: Part of ENCODE experiment ENCSR000AFV. The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 224.00 0.01 0.67 4.05 MT-TE-201 Mt tRNA liver (Tissue)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 8572.00 0.32 25.55 100.0 MT-TE-201 Mt tRNA liver (Tissue)
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 2366504.00 88.47 7054.55 92.99 MT-TE-201 Mt tRNA liver (Tissue)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 5311.00 0.20 15.83 96.53 MT-TE-201 Mt tRNA liver (Tissue)
ENST00000387459.1 ENST00000387459.1_13_67_+ 13–67 76.00 0.00 0.23 100.0 MT-TE-201 Mt tRNA liver (Tissue)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 4.00 100.00 0.01 100.0 MIR196A1-201 miRNA liver (Tissue)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 1.00 0.01 0.00 100.0 MT-RNR1-201 Mt rRNA liver (Tissue)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 4370.00 37.02 13.03 100.0 MT-RNR1-201 Mt rRNA liver (Tissue)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 1179.00 73.92 3.51 100.0 MIR454-201 miRNA liver (Tissue)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 759.00 62.68 2.26 100.0 MIR501-201 miRNA liver (Tissue)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 2714.00 90.02 8.09 100.0 MIR769-201 miRNA liver (Tissue)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 199.00 66.56 0.59 100.0 KRTAP19-1-201 protein coding liver (Tissue)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 16.00 30.77 0.05 100.0 MIR708-201 miRNA liver (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 2.00 100.00 0.01 100.0 MIR509-3-201 miRNA liver (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 352.00 50.50 1.05 100.0 MIR543-201 miRNA liver (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 272.00 96.80 0.81 100.0 MIR301B-201 miRNA liver (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 2536.00 52.33 7.56 75.19 RNU1-82P-201 snRNA liver (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 691.00 5.28 2.06 100.0 SNORD66-201 snoRNA liver (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 4491.00 34.35 13.39 100.0 SNORD66-201 snoRNA liver (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 276.00 2.11 0.82 100.0 SNORD66-201 snoRNA liver (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 2304.00 17.62 6.87 79.37 SNORD66-201 snoRNA liver (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 234.00 62.57 0.70 100.0 U3.17-201 snoRNA liver (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 7126.00 65.49 21.24 100.0 SNORD17-201 snoRNA liver (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 879.00 49.86 2.62 100.0 SNORD72-201 snoRNA liver (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 4156.00 77.93 12.39 100.0 SNORD70B-201 snoRNA liver (Tissue)