ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 206.00 2.66 0.56 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 43.00 0.56 0.12 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 61.00 0.79 0.16 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 4362.00 0.27 11.76 95.51 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 2412.00 0.15 6.50 74.47 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 948.00 0.06 2.55 55.67 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 2804.00 16.47 7.56 47.53 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 3213.00 96.75 8.66 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 529.00 35.38 1.43 85.88 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 499.00 89.75 1.34 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 190.00 0.26 0.51 87.96 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 26.00 0.04 0.07 12.04 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 37059.00 51.14 99.87 78.82 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 16720.96 29.37 45.06 40.41 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 528.00 0.93 1.42 69.75 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 35083.56 61.63 94.55 68.56 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 253482.00 91.52 683.12 95.56 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 358.00 9.95 0.96 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 14471.00 35.03 39.00 58.46 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 42.00 0.00 0.11 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 132.00 0.02 0.36 35.87 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 3308.00 66.65 8.91 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 193.00 9.80 0.52 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 949441.00 98.93 2558.70 99.88 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA urinary bladder (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 894.00 5.80 2.41 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA urinary bladder (Tissue)