ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 18955.65 46.76 51.08 57.96 POLG-DT-202 lncRNA urinary bladder (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 11548.70 28.49 31.12 36.02 POLG-DT-202 lncRNA urinary bladder (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 81.00 0.20 0.22 100.0 POLG-DT-202 lncRNA urinary bladder (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 22782.00 82.71 61.40 100.0 ENST00000570843 lncRNA urinary bladder (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 5719.00 72.34 15.41 100.0 MIR497HG-207 lncRNA urinary bladder (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 739311.00 99.24 1992.41 99.69 MIR22HG-212 lncRNA urinary bladder (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 58114.00 94.08 156.61 96.47 SNORD53B-201 snoRNA urinary bladder (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 295.00 0.48 0.80 55.56 SNORD53B-201 snoRNA urinary bladder (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 236.00 0.38 0.64 44.44 SNORD53B-201 snoRNA urinary bladder (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 698.00 80.05 1.88 100.0 ENST00000578036 lncRNA urinary bladder (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 4947.00 89.43 13.33 100.0 RPL23A-207 protein coding urinary bladder (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 1359.00 83.53 3.66 100.0 MIR744-201 miRNA urinary bladder (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 821.00 70.78 2.21 100.0 MIR378C-201 miRNA urinary bladder (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 4461.00 65.56 12.02 71.55 MIR142HG-201 lncRNA urinary bladder (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 16.00 0.24 0.04 100.0 MIR142HG-201 lncRNA urinary bladder (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 101.00 1.48 0.27 3.89 MIR142HG-201 lncRNA urinary bladder (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 354.00 3.51 0.95 100.0 SNORD3C-201 snoRNA urinary bladder (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 849.66 0.22 2.29 58.44 RPL23A-208 retained intron urinary bladder (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 621.16 0.16 1.67 54.2 RPL23A-208 retained intron urinary bladder (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 301728.00 79.81 813.14 89.79 RPL23A-208 retained intron urinary bladder (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 70316.00 18.60 189.50 91.04 RPL23A-208 retained intron urinary bladder (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 808.00 1.06 2.18 100.0 MIR133A1HG-202 lncRNA urinary bladder (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 8347.00 5.86 22.49 45.16 RPL17-211 retained intron urinary bladder (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 20640.00 14.49 55.62 60.13 RPL17-211 retained intron urinary bladder (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 382.00 0.27 1.03 100.0 RPL17-211 retained intron urinary bladder (Tissue)