ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 82003.00 41.40 220.99 98.14 RNY4-201 misc RNA urinary bladder (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 28278.00 14.28 76.21 99.46 RNY4-201 misc RNA urinary bladder (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 110.00 0.06 0.30 100.0 RNY4-201 misc RNA urinary bladder (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 1073.00 0.54 2.89 49.09 RNY4-201 misc RNA urinary bladder (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 381.00 77.76 1.03 88.81 MIR3142HG-201 lncRNA urinary bladder (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 8123.00 84.95 21.89 100.0 SNHG6-204 retained intron urinary bladder (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 62301.00 44.02 167.90 100.0 MIR151A-201 miRNA urinary bladder (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 64680.00 45.70 174.31 85.53 MIR151A-201 miRNA urinary bladder (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 5596.00 90.89 15.08 100.0 DENND3-221 protein coding urinary bladder (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1177.00 0.50 3.17 79.8 WDR74-204 protein coding urinary bladder (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 40.00 0.02 0.11 39.22 WDR74-204 protein coding urinary bladder (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 216.00 0.09 0.58 78.83 WDR74-204 protein coding urinary bladder (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 13.00 0.01 0.04 100.0 WDR74-204 protein coding urinary bladder (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 62.00 0.03 0.17 60.78 WDR74-204 protein coding urinary bladder (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 265.00 0.11 0.71 100.0 WDR74-204 protein coding urinary bladder (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 805.00 0.34 2.17 100.0 WDR74-204 protein coding urinary bladder (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 443.00 0.19 1.19 100.0 WDR74-204 protein coding urinary bladder (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 9925.00 82.65 26.75 100.0 HSPA8-211 retained intron urinary bladder (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 723.00 16.71 1.95 100.0 SCARNA9-201 lncRNA urinary bladder (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 29353.00 88.77 79.11 100.0 TAF1D-215 retained intron urinary bladder (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 349.00 1.06 0.94 100.0 TAF1D-215 retained intron urinary bladder (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 534.00 9.17 1.44 100.0 HSPA8-215 retained intron urinary bladder (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 3836.00 65.90 10.34 100.0 HSPA8-215 retained intron urinary bladder (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 18.00 0.31 0.05 100.0 HSPA8-215 retained intron urinary bladder (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 925.00 33.02 2.49 100.0 RPS2-215 retained intron urinary bladder (Tissue)