ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 723.00 0.65 1.95 100.0 RABGGTB-213 protein coding CDS not defined urinary bladder (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 16151.00 68.10 43.53 100.0 GNL3-211 retained intron urinary bladder (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 3718.00 15.68 10.02 100.0 GNL3-211 retained intron urinary bladder (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 3542.00 67.25 9.55 100.0 RPL5-205 retained intron urinary bladder (Tissue)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 2.00 0.04 0.01 100.0 RPL5-205 retained intron urinary bladder (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 682.00 12.95 1.84 100.0 RPL5-205 retained intron urinary bladder (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 113.00 7.39 0.30 100.0 ZBED9-AS1-201 lncRNA urinary bladder (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 14315.00 91.53 38.58 100.0 RPS3A-206 retained intron urinary bladder (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 10921.00 91.33 29.43 100.0 COX7C-203 protein coding urinary bladder (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 948.00 0.42 2.55 100.0 RACK1-229 protein coding urinary bladder (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 171520.98 75.36 462.24 80.92 RACK1-229 protein coding urinary bladder (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 5560.00 2.44 14.98 87.79 RACK1-229 protein coding urinary bladder (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 42172.74 18.53 113.65 26.39 RACK1-229 protein coding urinary bladder (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 96004.00 82.96 258.73 97.52 RACK1-230 retained intron urinary bladder (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 17488.00 15.11 47.13 70.12 RACK1-230 retained intron urinary bladder (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 150.00 29.53 0.40 100.0 RNA5SP486-201 rRNA pseudogene urinary bladder (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1145.00 79.24 3.09 100.0 SCARNA5-201 scaRNA urinary bladder (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 28278.00 14.28 76.21 99.46 RNY4-201 misc RNA urinary bladder (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 110.00 0.06 0.30 100.0 RNY4-201 misc RNA urinary bladder (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 1073.00 0.54 2.89 49.09 RNY4-201 misc RNA urinary bladder (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 10433.00 5.27 28.12 32.07 RNY4-201 misc RNA urinary bladder (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 1052.00 0.53 2.84 100.0 RNY4-201 misc RNA urinary bladder (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 7902.00 3.99 21.30 83.56 RNY4-201 misc RNA urinary bladder (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 1217.00 0.61 3.28 100.0 RNY4-201 misc RNA urinary bladder (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 157.00 0.08 0.42 53.95 RNY4-201 misc RNA urinary bladder (Tissue)