ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 4306.00 0.61 11.60 100.0 RPL21-209 retained intron urinary bladder (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 2446.00 0.34 6.59 100.0 RPL21-209 retained intron urinary bladder (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 1240.00 23.59 3.34 100.0 GABRE-209 retained intron urinary bladder (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 9.00 0.00 0.02 100.0 RPL13A-212 retained intron urinary bladder (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 82.00 0.03 0.22 100.0 RPL13A-212 retained intron urinary bladder (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 168.00 0.06 0.45 100.0 RPL13A-212 retained intron urinary bladder (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 4005.00 1.54 10.79 100.0 RPL13A-212 retained intron urinary bladder (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 20000.00 7.67 53.90 78.71 RPL13A-212 retained intron urinary bladder (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 762.00 0.29 2.05 100.0 RPL13A-212 retained intron urinary bladder (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 36.00 0.01 0.10 12.24 RPL13A-212 retained intron urinary bladder (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 203229.00 77.96 547.69 97.61 RPL13A-212 retained intron urinary bladder (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 764.00 9.94 2.06 100.0 RPL7A-207 protein coding CDS not defined urinary bladder (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 3876.00 50.44 10.45 81.36 RPL7A-207 protein coding CDS not defined urinary bladder (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 70.00 0.91 0.19 100.0 RPL7A-207 protein coding CDS not defined urinary bladder (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1351.00 4.87 3.64 100.0 RN7SL2-201 misc RNA urinary bladder (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 526.00 1.90 1.42 34.07 RN7SL2-201 misc RNA urinary bladder (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 3.00 13.04 0.01 100.0 RGS11-208 retained intron urinary bladder (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 4454.00 10.30 12.00 79.42 NOP56-217 protein coding CDS not defined urinary bladder (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 24259.00 56.11 65.38 70.51 NOP56-217 protein coding CDS not defined urinary bladder (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 723.00 0.65 1.95 100.0 RABGGTB-213 protein coding CDS not defined urinary bladder (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 481.00 0.43 1.30 100.0 RABGGTB-213 protein coding CDS not defined urinary bladder (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 558.00 0.50 1.50 55.14 RABGGTB-213 protein coding CDS not defined urinary bladder (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 61768.00 55.11 166.46 88.62 RABGGTB-213 protein coding CDS not defined urinary bladder (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 33928.00 30.27 91.43 97.02 RABGGTB-213 protein coding CDS not defined urinary bladder (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 105.00 0.09 0.28 100.0 RABGGTB-213 protein coding CDS not defined urinary bladder (Tissue)