ENCFF001RTT

Library Details

Organism: Homo Sapiens
Biosample: urinary bladder (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFP
Description: Part of ENCODE experiment ENCSR000AFP. The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 383.00 3.75 1.03 87.05 TMEM107-204 protein coding urinary bladder (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 436.00 4.27 1.18 100.0 TMEM107-204 protein coding urinary bladder (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 1348.00 13.21 3.63 71.13 TMEM107-204 protein coding urinary bladder (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 1415.00 13.87 3.81 100.0 TMEM107-204 protein coding urinary bladder (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 3897.00 60.68 10.50 88.29 SNHG16-201 lncRNA urinary bladder (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1667.00 25.96 4.49 100.0 SNHG16-201 lncRNA urinary bladder (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 112.00 16.94 0.30 100.0 SNHG14-207 lncRNA urinary bladder (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 76649.00 88.08 206.57 96.71 SNORD105B-201 snoRNA urinary bladder (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 3197.00 46.37 8.62 60.4 SNORD121B-201 snoRNA urinary bladder (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 166.00 0.18 0.45 100.0 SNORD127-201 snoRNA urinary bladder (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 89359.00 95.90 240.82 99.28 SNORD127-201 snoRNA urinary bladder (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 41709.00 95.35 112.40 100.0 SNORD42B-201 snoRNA urinary bladder (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 104.00 0.32 0.28 100.0 RNY4P25-201 misc RNA urinary bladder (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 917.00 65.22 2.47 100.0 SNORD121A-201 snoRNA urinary bladder (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 10414.00 77.20 28.07 90.91 SNORD126-201 snoRNA urinary bladder (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 2542.00 18.84 6.85 65.23 SNORD126-201 snoRNA urinary bladder (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 19165.00 91.45 51.65 95.92 SNORD124-201 snoRNA urinary bladder (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 91.00 5.74 0.25 100.0 SNHG12-201 retained intron urinary bladder (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 6789.00 37.65 18.30 100.0 RPL3-212 retained intron urinary bladder (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 6751.00 37.44 18.19 95.37 RPL3-212 retained intron urinary bladder (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 62295.00 97.58 167.88 100.0 SMC1A-204 retained intron urinary bladder (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 24927.00 85.20 67.18 97.57 RABGGTB-208 protein coding CDS not defined urinary bladder (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 6972.00 44.93 18.79 77.78 DDX39B-219 retained intron urinary bladder (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 906.00 5.84 2.44 100.0 DDX39B-219 retained intron urinary bladder (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1648.00 10.62 4.44 100.0 DDX39B-219 retained intron urinary bladder (Tissue)