ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 61261.00 92.91 128.48 95.87 SNORD53B-201 snoRNA metanephros (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 199.00 0.30 0.42 23.22 SNORD53B-201 snoRNA metanephros (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 363.00 89.41 0.76 100.0 ENST00000578036 lncRNA metanephros (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 4069.00 89.96 8.53 100.0 RPL23A-207 protein coding metanephros (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 827.00 84.47 1.73 100.0 MIR744-201 miRNA metanephros (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 1079.00 73.75 2.26 100.0 MIR378C-201 miRNA metanephros (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 6044.00 72.38 12.68 79.02 MIR142HG-201 lncRNA metanephros (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 19.00 0.23 0.04 100.0 MIR142HG-201 lncRNA metanephros (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 225.00 2.69 0.47 7.9 MIR142HG-201 lncRNA metanephros (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 939.00 9.04 1.97 100.0 SNORD3C-201 snoRNA metanephros (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 702.51 0.20 1.47 67.23 RPL23A-208 retained intron metanephros (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 302.71 0.09 0.63 44.06 RPL23A-208 retained intron metanephros (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 255882.00 72.09 536.64 85.88 RPL23A-208 retained intron metanephros (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 93939.00 26.47 197.01 90.65 RPL23A-208 retained intron metanephros (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 1941.00 1.81 4.07 100.0 MIR133A1HG-202 lncRNA metanephros (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 3529.00 2.57 7.40 37.41 RPL17-211 retained intron metanephros (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 13372.00 9.75 28.04 46.81 RPL17-211 retained intron metanephros (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 101.00 0.07 0.21 100.0 RPL17-211 retained intron metanephros (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 76643.00 55.88 160.74 95.59 RPL17-211 retained intron metanephros (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 37963.00 27.68 79.62 97.53 RPL17-211 retained intron metanephros (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 20711.00 54.63 43.44 72.0 ENST00000582320 lncRNA metanephros (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 4400.00 11.61 9.23 100.0 ENST00000582320 lncRNA metanephros (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 3595.00 9.48 7.54 100.0 ENST00000582320 lncRNA metanephros (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 662.00 1.93 1.39 100.0 RPL17-214 retained intron metanephros (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 13132.29 38.22 27.54 47.15 RPL17-214 retained intron metanephros (Tissue)