ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 35389.00 51.17 74.22 100.0 SNHG14-220 retained intron metanephros (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 479.00 97.76 1.00 100.0 TEKT4P2-201 transcribed unprocessed pseudogene metanephros (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 547.00 0.19 1.15 100.0 RPL4-202 retained intron metanephros (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 279919.00 96.33 587.05 99.51 RPL4-202 retained intron metanephros (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 238.00 0.08 0.50 100.0 RPL4-202 retained intron metanephros (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 230.00 0.08 0.48 100.0 RPL4-202 retained intron metanephros (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 10.00 0.00 0.02 100.0 RPL4-202 retained intron metanephros (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 1.00 0.00 0.00 100.0 ENST00000563103 lncRNA metanephros (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 427.00 5.58 0.90 100.0 RPL4-207 retained intron metanephros (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 3604.00 47.13 7.56 100.0 RPL4-207 retained intron metanephros (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 1259.00 3.08 2.64 77.38 ENST00000565336 lncRNA metanephros (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 33678.00 82.50 70.63 93.82 ENST00000565336 lncRNA metanephros (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 3932.00 1.53 8.25 100.0 RBMX-210 retained intron metanephros (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 413.00 0.16 0.87 100.0 RBMX-210 retained intron metanephros (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 204890.00 79.47 429.70 83.68 RBMX-210 retained intron metanephros (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 2415.00 0.94 5.06 100.0 RBMX-210 retained intron metanephros (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 4193.00 57.34 8.79 100.0 RPL4-214 retained intron metanephros (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 371.00 5.07 0.78 100.0 RPL4-214 retained intron metanephros (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 61.00 0.38 0.13 100.0 POLG-DT-202 lncRNA metanephros (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 6936.36 43.48 14.55 56.91 POLG-DT-202 lncRNA metanephros (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 4774.89 29.93 10.01 38.85 POLG-DT-202 lncRNA metanephros (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 6674.00 82.11 14.00 100.0 ENST00000570843 lncRNA metanephros (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 1503.00 79.57 3.15 100.0 MIR497HG-207 lncRNA metanephros (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 177239.00 99.06 371.71 99.65 MIR22HG-212 lncRNA metanephros (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 658.00 1.00 1.38 76.78 SNORD53B-201 snoRNA metanephros (Tissue)