ENCFF001RMU

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 90996.00 96.28 190.84 98.99 SNORD19C-201 snoRNA metanephros (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 1456.00 1.54 3.05 100.0 SNORD12B-201 snoRNA metanephros (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 51.00 0.05 0.11 100.0 SNORD12B-201 snoRNA metanephros (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 87417.00 92.46 183.33 98.73 SNORD12B-201 snoRNA metanephros (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 1141.00 45.68 2.39 100.0 Y_RNA.609-201 misc RNA metanephros (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 164.00 46.33 0.34 100.0 Y_RNA.612-201 misc RNA metanephros (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 83448.00 90.16 175.01 98.16 SNORD71-201 snoRNA metanephros (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 3210.00 3.47 6.73 100.0 SNORD71-201 snoRNA metanephros (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 559.00 0.60 1.17 100.0 SNORD71-201 snoRNA metanephros (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 28912.00 72.07 60.63 91.07 MIR194-2HG-201 lncRNA metanephros (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 8817.00 21.98 18.49 67.73 MIR194-2HG-201 lncRNA metanephros (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 17.00 51.52 0.04 100.0 RPS7P15-201 processed pseudogene metanephros (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 139.00 2.09 0.29 100.0 SNORD62B-201 snoRNA metanephros (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 697.00 10.50 1.46 100.0 SNORD62B-201 snoRNA metanephros (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 630.00 9.49 1.32 100.0 SNORD62B-201 snoRNA metanephros (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 426.00 6.42 0.89 100.0 SNORD62B-201 snoRNA metanephros (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 1525.00 22.98 3.20 88.46 SNORD62B-201 snoRNA metanephros (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 23.00 76.67 0.05 100.0 MRPL32-203 nonsense mediated decay metanephros (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 111.00 90.98 0.23 100.0 ENST00000436739 lncRNA metanephros (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 2296.00 15.11 4.82 80.76 TMEM107-204 protein coding metanephros (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 1207.00 7.94 2.53 100.0 TMEM107-204 protein coding metanephros (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 365.00 2.40 0.77 100.0 TMEM107-204 protein coding metanephros (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 57.00 0.38 0.12 100.0 TMEM107-204 protein coding metanephros (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 3727.00 24.53 7.82 72.65 TMEM107-204 protein coding metanephros (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1453.00 63.87 3.05 92.43 SNHG16-201 lncRNA metanephros (Tissue)