ENCFF001RMT

Library Details

Organism: Homo Sapiens
Biosample: thyroid gland (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGE
Description: Part of ENCODE experiment ENCSR000AGE. The libraries contained in this experiment come from human fetal thyroid gland tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 11087.00 6.31 14.62 67.7 RNY4-201 misc RNA thyroid gland (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 26375.00 15.01 34.79 100.0 RNY4-201 misc RNA thyroid gland (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 24583.00 78.13 32.43 84.89 MIR3142HG-201 lncRNA thyroid gland (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 19427.00 81.06 25.63 100.0 SNHG6-204 retained intron thyroid gland (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 72463.00 39.21 95.58 100.0 MIR151A-201 miRNA thyroid gland (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 91889.00 49.72 121.21 85.96 MIR151A-201 miRNA thyroid gland (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 3942.00 97.29 5.20 100.0 DENND3-221 protein coding thyroid gland (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 16.00 0.01 0.02 100.0 WDR74-204 protein coding thyroid gland (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 47.00 0.02 0.06 66.2 WDR74-204 protein coding thyroid gland (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 2730.00 0.97 3.60 69.73 WDR74-204 protein coding thyroid gland (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 24.00 0.01 0.03 33.8 WDR74-204 protein coding thyroid gland (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 150.00 0.05 0.20 62.24 WDR74-204 protein coding thyroid gland (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 801.00 0.28 1.06 100.0 WDR74-204 protein coding thyroid gland (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 1803.00 0.64 2.38 100.0 WDR74-204 protein coding thyroid gland (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 66.00 0.02 0.09 100.0 WDR74-204 protein coding thyroid gland (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 53840.00 81.50 71.02 100.0 HSPA8-211 retained intron thyroid gland (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 864.00 11.43 1.14 100.0 SCARNA9-201 lncRNA thyroid gland (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 111595.00 91.87 147.20 100.0 TAF1D-215 retained intron thyroid gland (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 1515.00 1.25 2.00 100.0 TAF1D-215 retained intron thyroid gland (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 8821.00 16.59 11.64 100.0 HSPA8-215 retained intron thyroid gland (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 32761.00 61.61 43.21 100.0 HSPA8-215 retained intron thyroid gland (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 130.00 0.24 0.17 100.0 HSPA8-215 retained intron thyroid gland (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 2420.00 32.70 3.19 100.0 RPS2-215 retained intron thyroid gland (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 221553.00 82.63 292.24 83.86 ENST00000548801 lncRNA thyroid gland (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 70.00 0.35 0.09 100.0 ENST00000554988 lncRNA thyroid gland (Tissue)