ENCFF001RMT

Library Details

Organism: Homo Sapiens
Biosample: thyroid gland (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGE
Description: Part of ENCODE experiment ENCSR000AGE. The libraries contained in this experiment come from human fetal thyroid gland tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 6177.00 0.70 8.15 54.72 RPL13A-212 retained intron thyroid gland (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 692550.00 78.42 913.52 97.97 RPL13A-212 retained intron thyroid gland (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 3155.00 0.36 4.16 100.0 RPL13A-212 retained intron thyroid gland (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 14.00 0.00 0.02 100.0 RPL13A-212 retained intron thyroid gland (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 39680.00 4.49 52.34 77.24 RPL13A-212 retained intron thyroid gland (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 1012.00 0.11 1.33 100.0 RPL13A-212 retained intron thyroid gland (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 14577.00 1.65 19.23 100.0 RPL13A-212 retained intron thyroid gland (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 28.00 0.00 0.04 100.0 RPL13A-212 retained intron thyroid gland (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 3093.00 10.18 4.08 100.0 RPL7A-207 protein coding CDS not defined thyroid gland (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 12723.00 41.87 16.78 71.63 RPL7A-207 protein coding CDS not defined thyroid gland (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 239.00 0.79 0.32 100.0 RPL7A-207 protein coding CDS not defined thyroid gland (Tissue)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 1.00 0.00 0.00 100.0 RPL7A-207 protein coding CDS not defined thyroid gland (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 304.00 2.68 0.40 100.0 RN7SL2-201 misc RNA thyroid gland (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 206.00 1.82 0.27 8.89 RN7SL2-201 misc RNA thyroid gland (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 6.00 42.86 0.01 100.0 RGS11-208 retained intron thyroid gland (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 64562.00 62.20 85.16 73.83 NOP56-217 protein coding CDS not defined thyroid gland (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 6501.00 6.26 8.58 82.09 NOP56-217 protein coding CDS not defined thyroid gland (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 1320.00 0.28 1.74 40.58 RABGGTB-213 protein coding CDS not defined thyroid gland (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2025.00 0.43 2.67 100.0 RABGGTB-213 protein coding CDS not defined thyroid gland (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2158.00 0.46 2.85 100.0 RABGGTB-213 protein coding CDS not defined thyroid gland (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 1933.00 0.41 2.55 59.42 RABGGTB-213 protein coding CDS not defined thyroid gland (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 243676.00 51.83 321.43 90.92 RABGGTB-213 protein coding CDS not defined thyroid gland (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 160910.00 34.22 212.25 96.92 RABGGTB-213 protein coding CDS not defined thyroid gland (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 2789.00 0.59 3.68 100.0 RABGGTB-213 protein coding CDS not defined thyroid gland (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 27116.00 61.05 35.77 100.0 GNL3-211 retained intron thyroid gland (Tissue)