ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000699460.1 ENST00000699460.1_2148_2169_+ 2148–2169 911.00 17.29 1.89 100.0 MEG9-206 lncRNA diencephalon (Tissue)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 1415.00 13.43 2.93 100.0 DNAJC5-203 nonsense mediated decay diencephalon (Tissue)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 577.00 24.18 1.20 100.0 ENST00000707189 TEC diencephalon (Tissue)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 258.00 0.10 0.53 100.0 MIR17HG-214 lncRNA diencephalon (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 132089.90 49.45 273.89 54.01 MIR17HG-214 lncRNA diencephalon (Tissue)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 45.00 0.02 0.09 100.0 MIR17HG-214 lncRNA diencephalon (Tissue)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 164.00 0.06 0.34 100.0 MIR17HG-214 lncRNA diencephalon (Tissue)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 123058.93 46.07 255.16 48.87 MIR17HG-214 lncRNA diencephalon (Tissue)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 2719.00 1.02 5.64 100.0 MIR17HG-214 lncRNA diencephalon (Tissue)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 297.00 0.11 0.62 100.0 MIR17HG-214 lncRNA diencephalon (Tissue)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 3197.00 1.20 6.63 100.0 MIR17HG-214 lncRNA diencephalon (Tissue)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 2015.00 0.75 4.18 100.0 MIR17HG-214 lncRNA diencephalon (Tissue)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 1672.00 0.26 3.47 100.0 SNHG32-223 lncRNA diencephalon (Tissue)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 1071.00 0.17 2.22 100.0 SNHG32-223 lncRNA diencephalon (Tissue)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 883.00 0.14 1.83 100.0 SNHG32-223 lncRNA diencephalon (Tissue)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 5496.00 0.86 11.40 63.66 SNHG32-223 lncRNA diencephalon (Tissue)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 623812.00 97.15 1293.48 100.0 SNHG32-223 lncRNA diencephalon (Tissue)
ENST00000718231.1 ENST00000718231.1_1950_2016_+ 1950–2016 35464.00 86.10 73.53 95.37 SNHG32-227 lncRNA diencephalon (Tissue)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 327.00 0.79 0.68 100.0 SNHG32-227 lncRNA diencephalon (Tissue)
ENST00000718231.1 ENST00000718231.1_1955_2016_+ 1955–2016 440.00 1.07 0.91 100.0 SNHG32-227 lncRNA diencephalon (Tissue)
ENST00000718231.1 ENST00000718231.1_1964_2016_+ 1964–2016 575.00 1.40 1.19 100.0 SNHG32-227 lncRNA diencephalon (Tissue)
ENST00000718311.1 ENST00000718311.1_841_855_+ 841–855 93.00 70.99 0.19 100.0 B4GALT1-203 nonsense mediated decay diencephalon (Tissue)
ENST00000722183.1 ENST00000722183.1_57_79_+ 57–79 2297.00 14.44 4.76 100.0 ENST00000722183 lncRNA diencephalon (Tissue)
ENST00000722183.1 ENST00000722183.1_143_158_+ 143–158 4708.00 29.60 9.76 80.41 ENST00000722183 lncRNA diencephalon (Tissue)
ENST00000722183.1 ENST00000722183.1_126_158_+ 126–158 1449.00 9.11 3.00 100.0 ENST00000722183 lncRNA diencephalon (Tissue)