ENCFF001RMS

Library Details

Organism: Homo Sapiens
Biosample: diencephalon (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFR
Description: Part of ENCODE experiment ENCSR000AFR. The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 704.00 13.34 1.46 100.0 LINC02739-203 lncRNA diencephalon (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 25.00 0.47 0.05 19.69 LINC02739-203 lncRNA diencephalon (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 28073.00 84.96 58.21 100.0 MIR124-1HG-216 lncRNA diencephalon (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 277.00 15.82 0.57 100.0 SNHG10-212 lncRNA diencephalon (Tissue)
ENST00000686899.3 ENST00000686899.3_568_649_+ 568–649 19648.48 29.24 40.74 30.37 SNHG19-202 lncRNA diencephalon (Tissue)
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 44785.55 66.65 92.86 78.44 SNHG19-202 lncRNA diencephalon (Tissue)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 11.19 0.02 0.02 93.24 SNHG19-202 lncRNA diencephalon (Tissue)
ENST00000688264.3 ENST00000688264.3_548_571_+ 548–571 12447.00 31.25 25.81 100.0 MIR222HG-206 lncRNA diencephalon (Tissue)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 19091.00 47.93 39.59 83.39 MIR222HG-206 lncRNA diencephalon (Tissue)
ENST00000688264.3 ENST00000688264.3_1362_1387_+ 1362–1387 1019.00 2.56 2.11 100.0 MIR222HG-206 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_458_485_+ 458–485 1.00 4.17 0.00 100.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_313_335_+ 313–335 1.00 4.17 0.00 50.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_190_212_+ 190–212 0.95 3.94 0.00 47.25 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_313_333_+ 313–333 1.00 4.17 0.00 50.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_190_210_+ 190–210 0.76 3.17 0.00 76.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_493_514_+ 493–514 4.00 16.67 0.01 100.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_673_694_+ 673–694 4.00 16.67 0.01 100.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_458_478_+ 458–478 4.00 16.67 0.01 100.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000688371.3 ENST00000688371.3_458_481_+ 458–481 1.00 4.17 0.00 50.0 MIR302CHG-205 lncRNA diencephalon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 3115.00 1.49 6.46 75.41 MIR99AHG-370 lncRNA diencephalon (Tissue)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 201579.00 96.14 417.98 99.0 MIR99AHG-370 lncRNA diencephalon (Tissue)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 170.00 88.54 0.35 100.0 HPS4-237 retained intron diencephalon (Tissue)
ENST00000699458.1 ENST00000699458.1_1475_1492_+ 1475–1492 5853.00 91.96 12.14 100.0 MEG8-253 lncRNA diencephalon (Tissue)
ENST00000699460.1 ENST00000699460.1_1623_1644_+ 1623–1644 898.00 17.04 1.86 100.0 MEG9-206 lncRNA diencephalon (Tissue)
ENST00000699460.1 ENST00000699460.1_1872_1893_+ 1872–1893 1446.00 27.44 3.00 100.0 MEG9-206 lncRNA diencephalon (Tissue)