ENCFF001RMR

Library Details

Organism: Homo Sapiens
Biosample: thyroid gland (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGE
Description: Part of ENCODE experiment ENCSR000AGE. The libraries contained in this experiment come from human fetal thyroid gland tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 97372.00 54.92 216.44 67.08 ENST00000582320 lncRNA thyroid gland (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 11643.00 6.57 25.88 100.0 ENST00000582320 lncRNA thyroid gland (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 10925.00 6.16 24.28 100.0 ENST00000582320 lncRNA thyroid gland (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 798.00 1.83 1.77 100.0 RPL17-214 retained intron thyroid gland (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 13940.57 31.97 30.99 42.4 RPL17-214 retained intron thyroid gland (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 25243.16 57.89 56.11 65.35 RPL17-214 retained intron thyroid gland (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 449.00 0.27 1.00 100.0 SNORD43-201 snoRNA thyroid gland (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 164247.00 97.92 365.09 99.96 SNORD43-201 snoRNA thyroid gland (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 260.00 0.16 0.58 100.0 SNORD43-201 snoRNA thyroid gland (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 637.00 41.63 1.42 100.0 MIR151B-201 miRNA thyroid gland (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 321.00 1.34 0.71 100.0 SNORD3A-201 snoRNA thyroid gland (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 23523.00 90.66 52.29 100.0 SNORD92-201 snoRNA thyroid gland (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 7166.00 63.96 15.93 100.0 NSRP1-214 protein coding thyroid gland (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 2488.00 22.21 5.53 78.71 NSRP1-214 protein coding thyroid gland (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 84.00 0.15 0.19 100.0 MIR23AHG-201 lncRNA thyroid gland (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 19147.00 34.94 42.56 94.54 MIR23AHG-201 lncRNA thyroid gland (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 17520.00 31.97 38.94 93.72 MIR23AHG-201 lncRNA thyroid gland (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 4016.00 7.33 8.93 72.62 MIR23AHG-201 lncRNA thyroid gland (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 6824.00 12.45 15.17 84.46 MIR23AHG-201 lncRNA thyroid gland (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 4.00 21.05 0.01 100.0 MIR122HG-201 lncRNA thyroid gland (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 210.00 50.48 0.47 100.0 ODAD3-204 nonsense mediated decay thyroid gland (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 210.00 0.24 0.47 100.0 VMP1-217 retained intron thyroid gland (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 15.00 0.02 0.03 100.0 VMP1-217 retained intron thyroid gland (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 46808.00 54.10 104.04 60.26 VMP1-217 retained intron thyroid gland (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 509.00 0.05 1.13 100.0 C19orf48P-203 retained intron thyroid gland (Tissue)