ENCFF001RMR

Library Details

Organism: Homo Sapiens
Biosample: thyroid gland (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGE
Description: Part of ENCODE experiment ENCSR000AGE. The libraries contained in this experiment come from human fetal thyroid gland tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 3482.00 12.17 7.74 61.15 TMEM107-204 protein coding thyroid gland (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 2026.00 7.08 4.50 100.0 TMEM107-204 protein coding thyroid gland (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 197.00 0.69 0.44 100.0 TMEM107-204 protein coding thyroid gland (Tissue)
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 1801.00 25.13 4.00 100.0 SNHG16-201 lncRNA thyroid gland (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 4174.00 58.24 9.28 86.63 SNHG16-201 lncRNA thyroid gland (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 82.00 20.45 0.18 100.0 SNHG14-207 lncRNA thyroid gland (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 156099.00 87.59 346.98 96.25 SNORD105B-201 snoRNA thyroid gland (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 8004.00 55.68 17.79 77.15 SNORD121B-201 snoRNA thyroid gland (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 427.00 0.34 0.95 100.0 SNORD127-201 snoRNA thyroid gland (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 118298.00 94.16 262.95 99.13 SNORD127-201 snoRNA thyroid gland (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 54413.00 95.17 120.95 100.0 SNORD42B-201 snoRNA thyroid gland (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 339.00 1.78 0.75 100.0 RNY4P25-201 misc RNA thyroid gland (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 2367.00 72.05 5.26 100.0 SNORD121A-201 snoRNA thyroid gland (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 9759.00 72.04 21.69 86.66 SNORD126-201 snoRNA thyroid gland (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 3079.00 22.73 6.84 70.39 SNORD126-201 snoRNA thyroid gland (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 32508.00 91.55 72.26 95.71 SNORD124-201 snoRNA thyroid gland (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 69.00 2.10 0.15 100.0 SNHG12-201 retained intron thyroid gland (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 26932.00 46.13 59.86 96.27 RPL3-212 retained intron thyroid gland (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 17443.00 29.87 38.77 100.0 RPL3-212 retained intron thyroid gland (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 32722.00 96.74 72.73 100.0 SMC1A-204 retained intron thyroid gland (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 57582.00 87.96 127.99 98.33 RABGGTB-208 protein coding CDS not defined thyroid gland (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 11827.00 44.81 26.29 78.84 DDX39B-219 retained intron thyroid gland (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 1693.00 6.41 3.76 100.0 DDX39B-219 retained intron thyroid gland (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 2265.00 8.58 5.03 100.0 DDX39B-219 retained intron thyroid gland (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 10624.00 72.83 23.61 100.0 RPS8-206 protein coding CDS not defined thyroid gland (Tissue)