ENCFF001RMP

Library Details

Organism: Homo Sapiens
Biosample: frontal cortex (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFS
Description: Part of ENCODE experiment ENCSR000AFS. The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 40211.00 46.68 64.17 81.75 MIR151A-201 miRNA frontal cortex (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 34198.00 39.70 54.57 100.0 MIR151A-201 miRNA frontal cortex (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 763.00 86.21 1.22 100.0 DENND3-221 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 393.00 0.13 0.63 100.0 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 715.00 0.24 1.14 100.0 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 164.00 0.06 0.26 100.0 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 25.00 0.01 0.04 55.56 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 11.00 0.00 0.02 100.0 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 15.00 0.01 0.02 93.75 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1733.00 0.58 2.77 66.17 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 1.00 0.00 0.00 6.25 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 9094.00 83.10 14.51 100.0 HSPA8-211 retained intron frontal cortex (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1776.00 22.49 2.83 100.0 SCARNA9-201 lncRNA frontal cortex (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 65192.00 94.81 104.04 100.0 TAF1D-215 retained intron frontal cortex (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 479.00 0.70 0.76 100.0 TAF1D-215 retained intron frontal cortex (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 2007.00 61.47 3.20 100.0 HSPA8-215 retained intron frontal cortex (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 30.00 0.92 0.05 100.0 HSPA8-215 retained intron frontal cortex (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 168.00 5.15 0.27 100.0 HSPA8-215 retained intron frontal cortex (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 326.00 19.78 0.52 100.0 RPS2-215 retained intron frontal cortex (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 660.00 84.18 1.05 85.83 ENST00000548801 lncRNA frontal cortex (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 2090.00 12.71 3.34 100.0 ENST00000554988 lncRNA frontal cortex (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 5398.00 32.82 8.61 100.0 ENST00000554988 lncRNA frontal cortex (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 58.00 0.35 0.09 100.0 ENST00000554988 lncRNA frontal cortex (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 1311.00 0.59 2.09 100.0 SNHG14-220 retained intron frontal cortex (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 1764.00 0.80 2.82 100.0 SNHG14-220 retained intron frontal cortex (Tissue)