ENCFF001RMP

Library Details

Organism: Homo Sapiens
Biosample: frontal cortex (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFS
Description: Part of ENCODE experiment ENCSR000AFS. The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000448136.6 ENST00000448136.6_1026_1098_+ 1026–1098 364.00 10.62 0.58 100.0 SNHG16-201 lncRNA frontal cortex (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 2374.00 69.23 3.79 95.42 SNHG16-201 lncRNA frontal cortex (Tissue)
ENST00000453082.5 ENST00000453082.5_267_347_+ 267–347 9588.00 15.17 15.30 100.0 SNHG14-207 lncRNA frontal cortex (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 221902.00 91.91 354.12 97.3 SNORD105B-201 snoRNA frontal cortex (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 3741.00 38.75 5.97 51.02 SNORD121B-201 snoRNA frontal cortex (Tissue)
ENST00000458892.1 ENST00000458892.1_5_80_+ 5–80 143029.00 96.23 228.25 99.26 SNORD127-201 snoRNA frontal cortex (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 74.00 0.05 0.12 100.0 SNORD127-201 snoRNA frontal cortex (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 14461.00 94.27 23.08 100.0 SNORD42B-201 snoRNA frontal cortex (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 268.00 0.98 0.43 100.0 RNY4P25-201 misc RNA frontal cortex (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 1155.00 72.14 1.84 100.0 SNORD121A-201 snoRNA frontal cortex (Tissue)
ENST00000459475.1 ENST00000459475.1_4_75_+ 4–75 1883.00 16.62 3.00 67.18 SNORD126-201 snoRNA frontal cortex (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 9138.00 80.63 14.58 93.17 SNORD126-201 snoRNA frontal cortex (Tissue)
ENST00000459577.1 ENST00000459577.1_12_91_+ 12–91 42108.00 93.32 67.20 96.42 SNORD124-201 snoRNA frontal cortex (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 39.00 3.13 0.06 100.0 SNHG12-201 retained intron frontal cortex (Tissue)
ENST00000467105.1 ENST00000467105.1_581_668_+ 581–668 5429.00 32.91 8.66 89.82 RPL3-212 retained intron frontal cortex (Tissue)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 5837.00 35.38 9.31 100.0 RPL3-212 retained intron frontal cortex (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 34192.00 96.29 54.57 100.0 SMC1A-204 retained intron frontal cortex (Tissue)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 15784.00 88.46 25.19 98.26 RABGGTB-208 protein coding CDS not defined frontal cortex (Tissue)
ENST00000481456.1 ENST00000481456.1_825_898_+ 825–898 16622.00 53.44 26.53 76.77 DDX39B-219 retained intron frontal cortex (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 1481.00 4.76 2.36 100.0 DDX39B-219 retained intron frontal cortex (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 2237.00 7.19 3.57 100.0 DDX39B-219 retained intron frontal cortex (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 3997.00 71.02 6.38 100.0 RPS8-206 protein coding CDS not defined frontal cortex (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 132533.00 93.26 211.50 99.39 RPL13-207 retained intron frontal cortex (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 3477.00 2.45 5.55 100.0 RPL13-207 retained intron frontal cortex (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 3045.00 0.36 4.86 50.21 EIF4A2-219 retained intron frontal cortex (Tissue)