ENCFF001RMM

Library Details

Organism: Homo Sapiens
Biosample: frontal cortex (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFS
Description: Part of ENCODE experiment ENCSR000AFS. The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 1339.77 29.42 2.21 69.45 5S_rRNA.20-201 rRNA pseudogene frontal cortex (Tissue)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 680.00 10.00 1.12 100.0 HSPA9-211 retained intron frontal cortex (Tissue)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 2391.00 35.15 3.94 59.97 HSPA9-211 retained intron frontal cortex (Tissue)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 1969.00 84.87 3.24 100.0 DNM3OS-205 lncRNA frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 2043.00 0.15 3.37 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 318.00 0.02 0.52 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 2767.00 0.20 4.56 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 884.00 0.06 1.46 74.41 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 9399.00 0.67 15.49 95.16 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 73.00 0.01 0.12 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 175.00 0.01 0.29 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 1753.00 0.12 2.89 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1022134.00 72.74 1684.47 99.79 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1847.00 0.13 3.04 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 1364.00 0.10 2.25 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 2308.00 0.16 3.80 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 1191.00 0.08 1.96 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 387.00 0.03 0.64 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 402.00 0.03 0.66 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 545.00 0.04 0.90 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 8705.00 0.62 14.35 78.11 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 11606.00 0.83 19.13 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 59465.00 4.23 98.00 100.0 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 52566.00 3.74 86.63 94.65 GAS5-230 retained intron frontal cortex (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 142810.00 10.16 235.35 100.0 GAS5-230 retained intron frontal cortex (Tissue)