ENCFF001RMM

Library Details

Organism: Homo Sapiens
Biosample: frontal cortex (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFS
Description: Part of ENCODE experiment ENCSR000AFS. The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 6767.00 2.52 11.15 100.0 RNY4-201 misc RNA frontal cortex (Tissue)
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 750.00 83.99 1.24 89.07 MIR3142HG-201 lncRNA frontal cortex (Tissue)
ENST00000521127.2 ENST00000521127.2_334_410_+ 334–410 17490.00 90.09 28.82 100.0 SNHG6-204 retained intron frontal cortex (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 37036.00 44.80 61.04 100.0 MIR151A-201 miRNA frontal cortex (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 35610.00 43.07 58.69 82.88 MIR151A-201 miRNA frontal cortex (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 992.00 89.05 1.63 100.0 DENND3-221 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 52.00 0.01 0.09 65.0 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 16.00 0.00 0.03 100.0 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 15.00 0.00 0.02 62.5 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_93_187_+ 93–187 1247.00 0.31 2.06 68.97 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 9.00 0.00 0.01 37.5 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 416.00 0.10 0.69 100.0 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 575.00 0.14 0.95 100.0 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 209.00 0.05 0.34 100.0 WDR74-204 protein coding frontal cortex (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 24283.00 87.86 40.02 100.0 HSPA8-211 retained intron frontal cortex (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1816.00 22.85 2.99 100.0 SCARNA9-201 lncRNA frontal cortex (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 202338.00 97.47 333.45 100.0 TAF1D-215 retained intron frontal cortex (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 514.00 0.25 0.85 100.0 TAF1D-215 retained intron frontal cortex (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 381.00 5.10 0.63 100.0 HSPA8-215 retained intron frontal cortex (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 5443.00 72.87 8.97 100.0 HSPA8-215 retained intron frontal cortex (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 69.00 0.92 0.11 100.0 HSPA8-215 retained intron frontal cortex (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 346.00 28.48 0.57 100.0 RPS2-215 retained intron frontal cortex (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 361.00 79.87 0.59 85.55 ENST00000548801 lncRNA frontal cortex (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 5097.00 32.17 8.40 100.0 ENST00000554988 lncRNA frontal cortex (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 106.00 0.67 0.17 100.0 ENST00000554988 lncRNA frontal cortex (Tissue)