ENCFF001RMM

Library Details

Organism: Homo Sapiens
Biosample: frontal cortex (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFS
Description: Part of ENCODE experiment ENCSR000AFS. The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 57.00 28.64 0.09 100.0 GABRE-209 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 704.00 0.34 1.16 70.9 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 1312.00 0.64 2.16 100.0 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 166660.00 81.20 274.66 98.32 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 13979.00 6.81 23.04 78.5 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 136.00 0.07 0.22 100.0 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 5.00 0.00 0.01 100.0 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 9.00 0.00 0.01 100.0 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 612.00 0.30 1.01 100.0 RPL13A-212 retained intron frontal cortex (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 463.00 3.03 0.76 100.0 RPL7A-207 protein coding CDS not defined frontal cortex (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 8947.00 58.56 14.74 79.08 RPL7A-207 protein coding CDS not defined frontal cortex (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 554.00 3.63 0.91 100.0 RPL7A-207 protein coding CDS not defined frontal cortex (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 353.00 2.82 0.58 44.35 RN7SL2-201 misc RNA frontal cortex (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 517.00 4.13 0.85 100.0 RN7SL2-201 misc RNA frontal cortex (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 9314.00 7.30 15.35 93.68 NOP56-217 protein coding CDS not defined frontal cortex (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 93008.00 72.91 153.28 82.6 NOP56-217 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 1098.00 1.20 1.81 100.0 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1014.00 1.11 1.67 100.0 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 157.00 0.17 0.26 41.64 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 49142.00 53.83 80.99 92.85 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 29386.00 32.19 48.43 93.52 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 64.00 0.07 0.11 100.0 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 220.00 0.24 0.36 58.36 RABGGTB-213 protein coding CDS not defined frontal cortex (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 4760.00 9.06 7.84 100.0 GNL3-211 retained intron frontal cortex (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 43486.00 82.79 71.66 100.0 GNL3-211 retained intron frontal cortex (Tissue)