ENCFF001RMK

Library Details

Organism: Homo Sapiens
Biosample: heart (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFT
Description: Part of ENCODE experiment ENCSR000AFT. The libraries contained in this experiment come from human fetal heart tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1013.00 0.47 1.76 59.38 RPL13A-212 retained intron heart (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 184901.00 85.99 320.88 98.4 RPL13A-212 retained intron heart (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 6629.00 3.08 11.50 81.88 RPL13A-212 retained intron heart (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 231.00 0.11 0.40 100.0 RPL13A-212 retained intron heart (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 2330.00 1.08 4.04 100.0 RPL13A-212 retained intron heart (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 3570.00 45.12 6.20 74.65 RPL7A-207 protein coding CDS not defined heart (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 160.00 2.02 0.28 100.0 RPL7A-207 protein coding CDS not defined heart (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 718.00 9.07 1.25 100.0 RPL7A-207 protein coding CDS not defined heart (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 782.00 13.74 1.36 40.18 RN7SL2-201 misc RNA heart (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 44.00 0.77 0.08 100.0 RN7SL2-201 misc RNA heart (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 14228.00 53.28 24.69 82.13 NOP56-217 protein coding CDS not defined heart (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 5632.00 21.09 9.77 89.03 NOP56-217 protein coding CDS not defined heart (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 148917.00 72.13 258.43 96.67 RABGGTB-213 protein coding CDS not defined heart (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 30418.00 14.73 52.79 89.13 RABGGTB-213 protein coding CDS not defined heart (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 781.00 0.38 1.36 100.0 RABGGTB-213 protein coding CDS not defined heart (Tissue)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2.00 0.00 0.00 100.0 RABGGTB-213 protein coding CDS not defined heart (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 503.00 0.24 0.87 44.67 RABGGTB-213 protein coding CDS not defined heart (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2285.00 1.11 3.97 100.0 RABGGTB-213 protein coding CDS not defined heart (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2867.00 1.39 4.98 100.0 RABGGTB-213 protein coding CDS not defined heart (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 623.00 0.30 1.08 55.33 RABGGTB-213 protein coding CDS not defined heart (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 2971.00 14.14 5.16 100.0 GNL3-211 retained intron heart (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 15322.00 72.91 26.59 100.0 GNL3-211 retained intron heart (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 992.00 14.11 1.72 100.0 RPL5-205 retained intron heart (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 3877.00 55.17 6.73 100.0 RPL5-205 retained intron heart (Tissue)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 1.00 0.01 0.00 100.0 RPL5-205 retained intron heart (Tissue)