ENCFF001RMJ

Library Details

Organism: Homo Sapiens
Biosample: skin of body (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGA
Description: Part of ENCODE experiment ENCSR000AGA. The libraries contained in this experiment come from human fetal skin tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 742.00 1.89 1.93 100.0 RPL17-214 retained intron skin of body (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 14383.86 36.65 37.40 44.91 RPL17-214 retained intron skin of body (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 22090.51 56.28 57.44 62.22 RPL17-214 retained intron skin of body (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 848.00 0.29 2.20 100.0 SNORD43-201 snoRNA skin of body (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 285730.00 97.75 742.93 99.95 SNORD43-201 snoRNA skin of body (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 508.00 0.17 1.32 100.0 SNORD43-201 snoRNA skin of body (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 258.00 43.73 0.67 100.0 MIR151B-201 miRNA skin of body (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 417.00 2.21 1.08 100.0 SNORD3A-201 snoRNA skin of body (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 18527.00 87.99 48.17 100.0 SNORD92-201 snoRNA skin of body (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 6771.00 75.98 17.61 100.0 NSRP1-214 protein coding skin of body (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 948.00 10.64 2.46 73.6 NSRP1-214 protein coding skin of body (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 368.00 0.55 0.96 100.0 MIR23AHG-201 lncRNA skin of body (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 19228.00 28.59 49.99 93.37 MIR23AHG-201 lncRNA skin of body (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 22260.00 33.10 57.88 94.61 MIR23AHG-201 lncRNA skin of body (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 6161.00 9.16 16.02 72.06 MIR23AHG-201 lncRNA skin of body (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 8214.00 12.21 21.36 80.02 MIR23AHG-201 lncRNA skin of body (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 12.00 40.00 0.03 100.0 MIR122HG-201 lncRNA skin of body (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 31.00 39.24 0.08 100.0 ODAD3-204 nonsense mediated decay skin of body (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 458.00 0.64 1.19 100.0 VMP1-217 retained intron skin of body (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 21.00 0.03 0.05 100.0 VMP1-217 retained intron skin of body (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 37768.00 52.54 98.20 57.87 VMP1-217 retained intron skin of body (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 349.00 0.07 0.91 100.0 C19orf48P-203 retained intron skin of body (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 403834.14 76.20 1050.01 84.66 C19orf48P-203 retained intron skin of body (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 122224.66 23.06 317.80 23.72 C19orf48P-203 retained intron skin of body (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 1019.00 0.19 2.65 85.7 C19orf48P-203 retained intron skin of body (Tissue)