ENCFF001RMG

Library Details

Organism: Homo Sapiens
Biosample: parietal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFY
Description: Part of ENCODE experiment ENCSR000AFY. The libraries contained in this experiment come from human fetal parietal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 24.00 0.01 0.10 100.0 WDR74-204 protein coding parietal lobe (Tissue)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 23254.00 89.04 98.84 100.0 HSPA8-211 retained intron parietal lobe (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 636.00 21.14 2.70 100.0 SCARNA9-201 lncRNA parietal lobe (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 219212.00 97.31 931.74 100.0 TAF1D-215 retained intron parietal lobe (Tissue)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 345.00 0.15 1.47 100.0 TAF1D-215 retained intron parietal lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 1647.00 14.48 7.00 100.0 HSPA8-215 retained intron parietal lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 7770.00 68.33 33.03 100.0 HSPA8-215 retained intron parietal lobe (Tissue)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 41.00 0.36 0.17 100.0 HSPA8-215 retained intron parietal lobe (Tissue)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 253.00 25.76 1.08 100.0 RPS2-215 retained intron parietal lobe (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 66.00 77.65 0.28 84.62 ENST00000548801 lncRNA parietal lobe (Tissue)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 1177.00 12.77 5.00 100.0 ENST00000554988 lncRNA parietal lobe (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 3403.00 36.91 14.46 100.0 ENST00000554988 lncRNA parietal lobe (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 21.00 0.23 0.09 100.0 ENST00000554988 lncRNA parietal lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 454.00 0.69 1.93 100.0 SNHG14-220 retained intron parietal lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 23382.00 35.55 99.38 100.0 SNHG14-220 retained intron parietal lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 38219.00 58.11 162.45 100.0 SNHG14-220 retained intron parietal lobe (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 690.00 1.05 2.93 100.0 SNHG14-220 retained intron parietal lobe (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 4059.00 99.19 17.25 100.0 TEKT4P2-201 transcribed unprocessed pseudogene parietal lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 67.00 0.06 0.28 100.0 RPL4-202 retained intron parietal lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 17.00 0.01 0.07 100.0 RPL4-202 retained intron parietal lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 390.00 0.33 1.66 100.0 RPL4-202 retained intron parietal lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 645.00 0.55 2.74 100.0 RPL4-202 retained intron parietal lobe (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 110437.00 93.74 469.40 98.75 RPL4-202 retained intron parietal lobe (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 225.00 0.39 0.96 100.0 RPL4-207 retained intron parietal lobe (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 46492.00 81.24 197.61 100.0 RPL4-207 retained intron parietal lobe (Tissue)