ENCFF001RMG

Library Details

Organism: Homo Sapiens
Biosample: parietal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFY
Description: Part of ENCODE experiment ENCSR000AFY. The libraries contained in this experiment come from human fetal parietal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 976.00 12.40 4.15 100.0 MIR708-201 miRNA parietal lobe (Tissue)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 2.00 33.33 0.01 100.0 MIR509-3-201 miRNA parietal lobe (Tissue)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 36.00 47.37 0.15 100.0 MIR543-201 miRNA parietal lobe (Tissue)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 3348.00 92.00 14.23 100.0 MIR301B-201 miRNA parietal lobe (Tissue)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 1921.00 61.41 8.17 85.91 RNU1-82P-201 snRNA parietal lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 1055.00 11.75 4.48 70.52 SNORD66-201 snoRNA parietal lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 3702.00 41.24 15.74 100.0 SNORD66-201 snoRNA parietal lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 82.00 0.91 0.35 100.0 SNORD66-201 snoRNA parietal lobe (Tissue)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 627.00 6.98 2.67 100.0 SNORD66-201 snoRNA parietal lobe (Tissue)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 725.00 83.91 3.08 100.0 U3.17-201 snoRNA parietal lobe (Tissue)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 988.00 68.80 4.20 100.0 SNORD17-201 snoRNA parietal lobe (Tissue)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 1579.00 72.76 6.71 100.0 SNORD72-201 snoRNA parietal lobe (Tissue)
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 4176.00 83.37 17.75 100.0 SNORD70B-201 snoRNA parietal lobe (Tissue)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 2248.00 43.19 9.55 87.88 RNY4P18-201 misc RNA parietal lobe (Tissue)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 136435.00 76.37 579.90 100.0 SNORD90-201 snoRNA parietal lobe (Tissue)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 34029.00 19.05 144.64 75.11 SNORD90-201 snoRNA parietal lobe (Tissue)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 499.00 0.63 2.12 100.0 SNORD69-201 snoRNA parietal lobe (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 74843.00 93.86 318.11 100.0 SNORD69-201 snoRNA parietal lobe (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 587.00 0.74 2.49 100.0 SNORD69-201 snoRNA parietal lobe (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 931.00 1.17 3.96 100.0 SNORD69-201 snoRNA parietal lobe (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 2121.00 61.42 9.02 80.62 SNORD70-201 snoRNA parietal lobe (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 2160.00 9.61 9.18 100.0 B4GALNT2-202 protein coding parietal lobe (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 14959.00 66.54 63.58 80.67 B4GALNT2-202 protein coding parietal lobe (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 1345.00 88.84 5.72 100.0 NDE1-202 protein coding parietal lobe (Tissue)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 18.00 81.82 0.08 100.0 MIR208B-201 miRNA parietal lobe (Tissue)