ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 120.00 13.26 0.22 41.67 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 284.00 95.95 0.53 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 72.00 31.72 0.13 93.51 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 117.00 95.12 0.22 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 5529.00 26.83 10.29 77.8 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 30.00 0.15 0.06 13.22 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 197.00 0.96 0.37 86.78 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 41.00 1.57 0.08 54.67 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 902.57 34.55 1.68 53.15 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 1164.27 44.57 2.17 62.56 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 25481.00 92.58 47.41 96.64 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 45.00 4.98 0.08 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 212.00 14.94 0.39 90.21 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 28.00 0.02 0.05 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 155.00 0.28 0.29 51.5 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 31.00 21.09 0.06 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 71.00 11.20 0.13 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 128837.00 98.22 239.70 99.83 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 21.00 0.74 0.04 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 1376.00 48.66 2.56 85.68 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 202.00 68.94 0.38 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 26.00 7.47 0.05 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 39.00 5.05 0.07 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 13039.00 96.65 24.26 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA metanephros (Tissue)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 869.00 92.55 1.62 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA metanephros (Tissue)