ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 81.00 8.48 0.15 100.0 RNU5E-1-201 snRNA metanephros (Tissue)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 4.00 0.13 0.01 19.05 RNA5SP370-201 rRNA pseudogene metanephros (Tissue)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 16.00 1.92 0.03 100.0 SNORA31-201 snoRNA metanephros (Tissue)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 113.00 3.75 0.21 65.32 RNA5SP389-201 rRNA pseudogene metanephros (Tissue)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 366.00 12.15 0.68 100.0 RNA5SP389-201 rRNA pseudogene metanephros (Tissue)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 155.00 5.14 0.29 100.0 RNA5SP389-201 rRNA pseudogene metanephros (Tissue)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 82.00 2.72 0.15 70.09 RNA5SP389-201 rRNA pseudogene metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 749.00 0.96 1.39 100.0 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 10336.00 13.25 19.23 78.65 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 4703.00 6.03 8.75 76.48 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 11599.00 14.87 21.58 88.92 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 3378.00 4.33 6.28 73.47 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 435.00 0.56 0.81 100.0 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 4422.00 5.67 8.23 79.32 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 3070.00 3.94 5.71 38.41 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 1111.03 1.42 2.07 57.39 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 2829.00 3.63 5.26 62.41 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 4995.00 6.41 9.29 100.0 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 3645.41 4.67 6.78 49.46 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 4304.57 5.52 8.01 63.48 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 991.36 1.27 1.84 37.09 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1887.00 2.42 3.51 35.42 RNU5A-1-201 snRNA metanephros (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 1298.00 81.23 2.41 100.0 SNORD114-14-201 snoRNA metanephros (Tissue)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 1141.00 8.41 2.12 100.0 SNORD104-201 snoRNA metanephros (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 242.00 1.78 0.45 100.0 SNORD104-201 snoRNA metanephros (Tissue)