ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 406.00 0.01 0.76 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 872.00 0.02 1.62 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 15915.00 0.40 29.61 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 666.00 0.02 1.24 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 2359.00 0.06 4.39 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 117690.00 2.97 218.96 73.57 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 753.00 0.02 1.40 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 249229.00 6.28 463.68 97.94 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 948.00 0.02 1.76 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 984.00 0.02 1.83 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 2.00 0.00 0.00 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 112749.00 2.84 209.77 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 5099.00 0.13 9.49 70.99 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 834.43 0.02 1.55 52.68 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 405.00 0.01 0.75 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 5061.00 0.13 9.42 59.59 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1366.00 0.03 2.54 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 807.00 0.02 1.50 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 507.00 0.01 0.94 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 103110.00 30.50 191.83 100.0 SNHG14-315 lncRNA metanephros (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 98151.00 29.04 182.61 88.9 SNHG14-315 lncRNA metanephros (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 85391.00 25.26 158.87 82.99 SNHG14-315 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 1259.00 0.73 2.34 97.15 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 2654.00 1.54 4.94 100.0 SNHG5-273 lncRNA metanephros (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 55601.49 32.23 103.44 44.97 SNHG5-273 lncRNA metanephros (Tissue)