ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000666663.1 ENST00000666663.1_2_82_+ 2–82 841.00 70.67 1.56 99.06 SNHG14-306 lncRNA metanephros (Tissue)
ENST00000666663.1 ENST00000666663.1_42_82_+ 42–82 21.00 1.76 0.04 100.0 SNHG14-306 lncRNA metanephros (Tissue)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 188.00 3.58 0.35 100.0 ENST00000666735 lncRNA metanephros (Tissue)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 615.00 11.70 1.14 100.0 ENST00000666735 lncRNA metanephros (Tissue)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 2645.00 82.58 4.92 100.0 MEG8-242 lncRNA metanephros (Tissue)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 10818.26 23.22 20.13 27.56 SNHG14-312 lncRNA metanephros (Tissue)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 27037.64 58.04 50.30 68.87 SNHG14-312 lncRNA metanephros (Tissue)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 400.00 0.86 0.74 100.0 SNHG14-312 lncRNA metanephros (Tissue)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 164.00 0.21 0.31 100.0 MEG8-244 lncRNA metanephros (Tissue)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 259.00 0.33 0.48 100.0 MEG8-244 lncRNA metanephros (Tissue)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 76210.00 97.83 141.79 99.59 MEG8-244 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 1612.00 0.04 3.00 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 7.00 0.00 0.01 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 6875.00 0.17 12.79 98.74 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 738.65 0.02 1.37 46.63 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 5390.00 0.14 10.03 81.35 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 2807956.00 70.76 5224.10 98.98 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 1223.00 0.03 2.28 70.13 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 115531.00 2.91 214.94 99.44 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 6470.00 0.16 12.04 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 309428.00 7.80 575.68 99.79 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 243.00 0.01 0.45 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 1570.00 0.04 2.92 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1977.00 0.05 3.68 100.0 SNHG1-248 lncRNA metanephros (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 1633.00 0.04 3.04 100.0 SNHG1-248 lncRNA metanephros (Tissue)