ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 768.00 68.45 1.43 100.0 MIR497HG-207 lncRNA metanephros (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 117090.00 98.96 217.84 99.52 MIR22HG-212 lncRNA metanephros (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 400.00 0.50 0.74 25.72 SNORD53B-201 snoRNA metanephros (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 1155.00 1.45 2.15 74.28 SNORD53B-201 snoRNA metanephros (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 72244.00 90.60 134.41 93.78 SNORD53B-201 snoRNA metanephros (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 473.00 90.96 0.88 100.0 ENST00000578036 lncRNA metanephros (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 9506.00 91.86 17.69 100.0 RPL23A-207 protein coding metanephros (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 1329.00 85.52 2.47 100.0 MIR744-201 miRNA metanephros (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 185.00 64.69 0.34 100.0 MIR378C-201 miRNA metanephros (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1272.00 66.42 2.37 76.58 MIR142HG-201 lncRNA metanephros (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 21.00 1.10 0.04 100.0 MIR142HG-201 lncRNA metanephros (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 120.00 6.27 0.22 15.92 MIR142HG-201 lncRNA metanephros (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 722.00 3.03 1.34 100.0 SNORD3C-201 snoRNA metanephros (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 1138.97 0.23 2.12 59.82 RPL23A-208 retained intron metanephros (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 768.77 0.16 1.43 52.84 RPL23A-208 retained intron metanephros (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 373868.00 76.92 695.57 87.62 RPL23A-208 retained intron metanephros (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 105527.00 21.71 196.33 90.11 RPL23A-208 retained intron metanephros (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 3.00 0.64 0.01 100.0 MIR133A1HG-202 lncRNA metanephros (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 553.00 0.20 1.03 100.0 RPL17-211 retained intron metanephros (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 7623.00 2.81 14.18 40.78 RPL17-211 retained intron metanephros (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 23644.00 8.72 43.99 38.42 RPL17-211 retained intron metanephros (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 161762.00 59.69 300.95 96.63 RPL17-211 retained intron metanephros (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 67574.00 24.93 125.72 97.42 RPL17-211 retained intron metanephros (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 3188.00 57.84 5.93 76.82 ENST00000582320 lncRNA metanephros (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 658.00 11.94 1.22 100.0 ENST00000582320 lncRNA metanephros (Tissue)