ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 28451.00 35.81 52.93 100.0 SNHG14-220 retained intron metanephros (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 45309.00 57.03 84.30 100.0 SNHG14-220 retained intron metanephros (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 698.00 0.88 1.30 100.0 SNHG14-220 retained intron metanephros (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 892.00 1.12 1.66 100.0 SNHG14-220 retained intron metanephros (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 2579.00 99.65 4.80 100.0 TEKT4P2-201 transcribed unprocessed pseudogene metanephros (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 5894.00 1.63 10.97 100.0 RPL4-202 retained intron metanephros (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 343817.00 94.95 639.66 99.46 RPL4-202 retained intron metanephros (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 387.00 0.11 0.72 100.0 RPL4-202 retained intron metanephros (Tissue)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 329.00 0.09 0.61 100.0 RPL4-202 retained intron metanephros (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 19.00 0.01 0.04 100.0 RPL4-202 retained intron metanephros (Tissue)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 4.00 0.07 0.01 100.0 ENST00000563103 lncRNA metanephros (Tissue)
ENST00000564647.5 ENST00000564647.5_345_386_+ 345–386 364.00 1.51 0.68 100.0 RPL4-207 retained intron metanephros (Tissue)
ENST00000564647.5 ENST00000564647.5_318_386_+ 318–386 17917.00 74.38 33.33 100.0 RPL4-207 retained intron metanephros (Tissue)
ENST00000565336.1 ENST00000565336.1_451_487_+ 451–487 1900.00 44.04 3.53 88.04 ENST00000565336 lncRNA metanephros (Tissue)
ENST00000565336.1 ENST00000565336.1_446_487_+ 446–487 1180.00 27.35 2.20 89.67 ENST00000565336 lncRNA metanephros (Tissue)
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 3110.00 0.57 5.79 100.0 RBMX-210 retained intron metanephros (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 469358.00 86.61 873.22 90.41 RBMX-210 retained intron metanephros (Tissue)
ENST00000565907.1 ENST00000565907.1_307_388_+ 307–388 1022.00 0.19 1.90 100.0 RBMX-210 retained intron metanephros (Tissue)
ENST00000565907.1 ENST00000565907.1_307_350_+ 307–350 3764.00 0.69 7.00 100.0 RBMX-210 retained intron metanephros (Tissue)
ENST00000567229.5 ENST00000567229.5_485_573_+ 485–573 7027.00 58.12 13.07 100.0 RPL4-214 retained intron metanephros (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 1567.00 12.96 2.92 100.0 RPL4-214 retained intron metanephros (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 182.00 2.42 0.34 100.0 POLG-DT-202 lncRNA metanephros (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 2781.50 37.03 5.17 72.49 POLG-DT-202 lncRNA metanephros (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 1930.28 25.70 3.59 44.6 POLG-DT-202 lncRNA metanephros (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 1219.00 53.54 2.27 100.0 ENST00000570843 lncRNA metanephros (Tissue)