ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 1001.00 14.60 1.86 100.0 RPL5-205 retained intron metanephros (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 4478.00 65.32 8.33 100.0 RPL5-205 retained intron metanephros (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 19.00 5.29 0.04 100.0 ZBED9-AS1-201 lncRNA metanephros (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 14983.00 87.94 27.88 100.0 RPS3A-206 retained intron metanephros (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 80644.00 97.69 150.04 100.0 COX7C-203 protein coding metanephros (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 4669.00 2.31 8.69 88.46 RACK1-229 protein coding metanephros (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 783.00 0.39 1.46 100.0 RACK1-229 protein coding metanephros (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 58102.44 28.78 108.10 37.06 RACK1-229 protein coding metanephros (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 124516.27 61.68 231.66 67.75 RACK1-229 protein coding metanephros (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 101005.00 33.81 187.92 66.32 RACK1-230 retained intron metanephros (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 188069.00 62.96 349.90 90.96 RACK1-230 retained intron metanephros (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 25.00 9.80 0.05 100.0 RNA5SP486-201 rRNA pseudogene metanephros (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 1620.00 83.81 3.01 100.0 SCARNA5-201 scaRNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_90_+ 1–90 16551.00 23.50 30.79 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 195.00 0.28 0.36 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 93.00 0.13 0.17 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 19145.00 27.18 35.62 96.92 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 7870.00 11.17 14.64 96.34 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 32.00 0.05 0.06 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 895.00 1.27 1.67 59.23 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 6546.00 9.29 12.18 90.65 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 833.00 1.18 1.55 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 2520.00 3.58 4.69 80.56 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 360.00 0.51 0.67 100.0 RNY4-201 misc RNA metanephros (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 1969.00 2.80 3.66 90.03 RNY4-201 misc RNA metanephros (Tissue)