ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 1431.00 0.44 2.66 100.0 RPL13A-212 retained intron metanephros (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 51.00 0.02 0.09 15.6 RPL13A-212 retained intron metanephros (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 12.00 0.00 0.02 100.0 RPL13A-212 retained intron metanephros (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 642.00 0.20 1.19 100.0 RPL13A-212 retained intron metanephros (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 3070.00 0.95 5.71 100.0 RPL13A-212 retained intron metanephros (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 25154.00 7.80 46.80 76.3 RPL13A-212 retained intron metanephros (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 784.00 3.74 1.46 100.0 RPL7A-207 protein coding CDS not defined metanephros (Tissue)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 1.00 0.00 0.00 100.0 RPL7A-207 protein coding CDS not defined metanephros (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 12087.00 57.61 22.49 76.56 RPL7A-207 protein coding CDS not defined metanephros (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 454.00 2.16 0.84 100.0 RPL7A-207 protein coding CDS not defined metanephros (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 921.00 1.93 1.71 24.69 RN7SL2-201 misc RNA metanephros (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1800.00 3.78 3.35 100.0 RN7SL2-201 misc RNA metanephros (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 9254.00 16.12 17.22 87.82 NOP56-217 protein coding CDS not defined metanephros (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 30307.00 52.80 56.39 71.67 NOP56-217 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 2453.00 1.10 4.56 100.0 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 545.00 0.24 1.01 52.4 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 153959.00 68.86 286.43 94.24 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 495.00 0.22 0.92 47.6 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2455.00 1.10 4.57 100.0 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 34488.00 15.42 64.16 88.77 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 544.00 0.24 1.01 100.0 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2.00 0.00 0.00 100.0 RABGGTB-213 protein coding CDS not defined metanephros (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 2917.00 11.53 5.43 100.0 GNL3-211 retained intron metanephros (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 19607.00 77.49 36.48 100.0 GNL3-211 retained intron metanephros (Tissue)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 2.00 0.03 0.00 100.0 RPL5-205 retained intron metanephros (Tissue)