ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 123407.00 96.01 229.59 98.56 SNORD19C-201 snoRNA metanephros (Tissue)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 2695.00 1.59 5.01 100.0 SNORD12B-201 snoRNA metanephros (Tissue)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 88.00 0.05 0.16 100.0 SNORD12B-201 snoRNA metanephros (Tissue)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 160307.00 94.37 298.25 98.7 SNORD12B-201 snoRNA metanephros (Tissue)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 319.00 35.41 0.59 100.0 Y_RNA.609-201 misc RNA metanephros (Tissue)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 76.00 49.67 0.14 100.0 Y_RNA.612-201 misc RNA metanephros (Tissue)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 184767.00 94.68 343.75 98.89 SNORD71-201 snoRNA metanephros (Tissue)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 4774.00 2.45 8.88 100.0 SNORD71-201 snoRNA metanephros (Tissue)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 1215.00 0.62 2.26 100.0 SNORD71-201 snoRNA metanephros (Tissue)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 26070.00 58.20 48.50 82.12 MIR194-2HG-201 lncRNA metanephros (Tissue)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 16314.00 36.42 30.35 73.16 MIR194-2HG-201 lncRNA metanephros (Tissue)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 7.00 70.00 0.01 100.0 RPS7P15-201 processed pseudogene metanephros (Tissue)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 64.00 0.53 0.12 100.0 SNORD62B-201 snoRNA metanephros (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 1207.00 10.02 2.25 100.0 SNORD62B-201 snoRNA metanephros (Tissue)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 742.00 6.16 1.38 100.0 SNORD62B-201 snoRNA metanephros (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 744.00 6.18 1.38 100.0 SNORD62B-201 snoRNA metanephros (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 4420.00 36.71 8.22 93.13 SNORD62B-201 snoRNA metanephros (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 50.00 84.75 0.09 100.0 MRPL32-203 nonsense mediated decay metanephros (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 100.00 89.29 0.19 100.0 ENST00000436739 lncRNA metanephros (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 3027.00 19.16 5.63 46.84 TMEM107-204 protein coding metanephros (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1267_+ 1182–1267 863.00 5.46 1.61 100.0 TMEM107-204 protein coding metanephros (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 380.00 2.40 0.71 100.0 TMEM107-204 protein coding metanephros (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 89.00 0.56 0.17 100.0 TMEM107-204 protein coding metanephros (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 118.00 0.75 0.22 62.11 TMEM107-204 protein coding metanephros (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 1647.00 62.41 3.06 90.3 SNHG16-201 lncRNA metanephros (Tissue)