ENCFF001RMF

Library Details

Organism: Homo Sapiens
Biosample: metanephros (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFU
Description: Part of ENCODE experiment ENCSR000AFU. The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 2621.00 1.54 4.88 100.0 SNORD69-201 snoRNA metanephros (Tissue)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 1732.00 1.01 3.22 100.0 SNORD69-201 snoRNA metanephros (Tissue)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 1167.00 0.68 2.17 100.0 SNORD69-201 snoRNA metanephros (Tissue)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 159587.00 93.50 296.91 100.0 SNORD69-201 snoRNA metanephros (Tissue)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 6278.00 58.76 11.68 69.19 SNORD70-201 snoRNA metanephros (Tissue)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 177.00 1.44 0.33 100.0 B4GALNT2-202 protein coding metanephros (Tissue)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 6700.00 54.39 12.47 66.3 B4GALNT2-202 protein coding metanephros (Tissue)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 1600.00 91.80 2.98 100.0 NDE1-202 protein coding metanephros (Tissue)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 6.00 100.00 0.01 100.0 MIR208B-201 miRNA metanephros (Tissue)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 997.00 63.34 1.85 100.0 MIR450B-201 miRNA metanephros (Tissue)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 645.00 53.97 1.20 100.0 MIR887-201 miRNA metanephros (Tissue)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 394.00 89.75 0.73 100.0 MIR889-201 miRNA metanephros (Tissue)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 4221.00 74.63 7.85 100.0 SNORD111-201 snoRNA metanephros (Tissue)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 4431.00 67.74 8.24 89.95 SNORD88A-201 snoRNA metanephros (Tissue)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 120.00 91.60 0.22 100.0 MIR548K-201 miRNA metanephros (Tissue)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 157.00 53.40 0.29 100.0 MIR320B2-201 miRNA metanephros (Tissue)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 1908.00 93.53 3.55 100.0 MIR1271-201 miRNA metanephros (Tissue)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 91.00 0.17 0.17 100.0 SNORD100-201 snoRNA metanephros (Tissue)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 47146.00 87.26 87.71 100.0 SNORD100-201 snoRNA metanephros (Tissue)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 2511.00 4.65 4.67 100.0 SNORD100-201 snoRNA metanephros (Tissue)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 542.00 1.00 1.01 100.0 SNORD100-201 snoRNA metanephros (Tissue)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 1186.00 56.86 2.21 100.0 SNORD111B-201 snoRNA metanephros (Tissue)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 2546.00 42.43 4.74 100.0 RNU2-36P-201 snRNA metanephros (Tissue)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 73.00 1.22 0.14 100.0 RNU2-36P-201 snRNA metanephros (Tissue)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 123407.00 96.01 229.59 98.56 SNORD19C-201 snoRNA metanephros (Tissue)