ENCFF000JEU

Library Details

Organism: Homo Sapiens
Biosample: thoracic aorta endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVA
Description: Part of ENCODE experiment ENCSR000CVA. The libraries contained in this experiment come from aortic adventital endothelial primary whole cells, HAoEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_2165_2249_+ 2165–2249 721.00 0.21 55.25 100.0 GAS5-230 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000650796.1 ENST00000650796.1_1641_1722_+ 1641–1722 135420.00 39.13 10376.26 73.12 GAS5-230 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 1.00 0.06 0.08 100.0 ENST00000651540 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000651540.1 ENST00000651540.1_1_88_+ 1–88 1169.00 71.19 89.57 100.0 ENST00000651540 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1362_1446_+ 1362–1446 43658.00 10.08 3345.20 98.03 SNHG29-232 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1440_+ 1361–1440 368379.00 85.05 28226.22 98.15 SNHG29-232 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1361_1451_+ 1361–1451 1233.00 0.28 94.48 100.0 SNHG29-232 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 1.00 0.00 0.08 100.0 SNHG29-232 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000654356.2 ENST00000654356.2_463_540_+ 463–540 428.00 0.10 32.79 100.0 SNHG29-232 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000655143.1 ENST00000655143.1_1868_1961_+ 1868–1961 4.00 7.27 0.31 100.0 SNHG14-234 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000655143.1 ENST00000655143.1_3091_3184_+ 3091–3184 1.00 1.82 0.08 100.0 SNHG14-234 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 1491.00 6.62 114.24 100.0 SNHG1-248 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_601_+ 517–601 2797.00 12.43 214.31 100.0 SNHG1-248 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668048.2 ENST00000668048.2_517_596_+ 517–596 11221.00 49.85 859.78 100.0 SNHG1-248 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_982_1066_+ 982–1066 376.00 1.58 28.81 100.0 SNHG5-273 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1356_+ 1272–1356 5843.00 24.57 447.71 76.99 SNHG5-273 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 12793.00 53.80 980.24 92.14 SNHG5-273 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000670697.1 ENST00000670697.1_226_313_+ 226–313 509.00 77.00 39.00 100.0 SNHG14-336 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000677786.1 ENST00000677786.1_3513_3605_+ 3513–3605 819.00 64.69 62.75 100.0 NCL-216 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 3716.42 51.80 284.76 70.45 SNHG19-202 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1416.45 19.74 108.53 32.88 SNHG19-202 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000693179.2 ENST00000693179.2_532_619_+ 532–619 645.00 40.69 49.42 100.0 SNHG8-214 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000722183.1 ENST00000722183.1_108_192_+ 108–192 1768.00 69.52 135.47 100.0 ENST00000722183 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000747512.1 ENST00000747512.1_63_156_+ 63–156 1480.00 81.32 113.40 100.0 ENST00000747512 lncRNA thoracic aorta endothelial cell (Primary cell)
ENST00000772672.1 ENST00000772672.1_21_113_+ 21–113 5813.00 89.36 445.41 100.0 ENST00000772672 lncRNA thoracic aorta endothelial cell (Primary cell)