ENCFF000JEU

Library Details

Organism: Homo Sapiens
Biosample: thoracic aorta endothelial cell (Primary cell)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000CVA
Description: Part of ENCODE experiment ENCSR000CVA. The libraries contained in this experiment come from aortic adventital endothelial primary whole cells, HAoEC isolated from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 26.00 20.31 1.99 92.86 RNU5A-1-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 16.53 12.92 1.27 59.05 RNU5A-1-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 13.59 10.62 1.04 36.73 RNU5A-1-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 1.00 0.78 0.08 100.0 RNU5A-1-201 snRNA thoracic aorta endothelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 5.00 1.16 0.38 100.0 7SK.1-201 misc RNA thoracic aorta endothelial cell (Primary cell)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 135.00 31.25 10.34 100.0 7SK.1-201 misc RNA thoracic aorta endothelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 16.00 1.44 1.23 84.21 SNORD83A-201 snoRNA thoracic aorta endothelial cell (Primary cell)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 4.00 0.36 0.31 100.0 SNORD83A-201 snoRNA thoracic aorta endothelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_81_+ 1–81 1845.00 62.27 141.37 100.0 SNORD12B-201 snoRNA thoracic aorta endothelial cell (Primary cell)
ENST00000410433.1 ENST00000410433.1_1_85_+ 1–85 495.00 16.71 37.93 100.0 SNORD12B-201 snoRNA thoracic aorta endothelial cell (Primary cell)
ENST00000437681.1 ENST00000437681.1_1009_1099_+ 1009–1099 8326.00 89.51 637.96 100.0 SNHG3-202 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000459577.1 ENST00000459577.1_6_92_+ 6–92 2453.00 68.65 187.96 100.0 SNORD124-201 snoRNA thoracic aorta endothelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 3.00 0.05 0.23 100.0 RPL3-212 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000467105.1 ENST00000467105.1_575_664_+ 575–664 4792.00 76.34 367.18 91.61 RPL3-212 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 602.00 4.00 46.13 100.0 RPL13A-212 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 12095.00 80.39 926.75 100.0 RPL13A-212 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_194_+ 110–194 1889.00 19.42 144.74 100.0 RPL7A-207 protein coding CDS not defined thoracic aorta endothelial cell (Primary cell)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 6309.00 64.85 483.41 100.0 RPL7A-207 protein coding CDS not defined thoracic aorta endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 2343.00 51.08 179.53 100.0 RABGGTB-213 protein coding CDS not defined thoracic aorta endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_465_549_+ 465–549 468.00 10.20 35.86 100.0 RABGGTB-213 protein coding CDS not defined thoracic aorta endothelial cell (Primary cell)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 5.00 0.11 0.38 100.0 RABGGTB-213 protein coding CDS not defined thoracic aorta endothelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 143806.00 98.79 11018.81 99.59 RPL5-205 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 20.00 0.01 1.53 100.0 RPL5-205 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000513060.5 ENST00000513060.5_706_790_+ 706–790 21.00 1.65 1.61 100.0 RACK1-230 retained intron thoracic aorta endothelial cell (Primary cell)
ENST00000521127.2 ENST00000521127.2_328_412_+ 328–412 914.00 5.01 70.03 100.0 SNHG6-204 retained intron thoracic aorta endothelial cell (Primary cell)