ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 232.00 91.70 0.49 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 185.00 2.02 0.39 79.74 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 47.00 0.51 0.10 20.26 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 4705.00 51.43 9.96 88.31 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 2275.28 21.87 4.82 30.22 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 165.00 1.59 0.35 59.57 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 6167.06 59.28 13.05 73.69 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 13258.00 89.93 28.07 94.72 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 14.00 0.95 0.03 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 1166.00 25.40 2.47 72.33 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 109.00 0.02 0.23 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 437.00 0.80 0.93 66.82 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 123.00 37.73 0.26 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 1066.00 29.73 2.26 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 498387.00 98.59 1055.01 99.87 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 2.00 0.04 0.00 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 863.00 18.05 1.83 66.28 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 903.00 77.25 1.91 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 32.00 14.04 0.07 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 267.00 23.90 0.57 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 30734.00 97.44 65.06 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 4020.00 91.74 8.51 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 24973.00 75.08 52.86 98.39 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 246.00 0.74 0.52 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 568.00 0.12 1.20 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA occipital lobe (Tissue)