ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 222.00 15.54 0.47 43.96 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 516.00 24.41 1.09 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 31159.00 57.59 65.96 93.22 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 1540.00 2.85 3.26 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 54.00 13.33 0.11 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 16.00 1.46 0.03 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 17.00 0.05 0.04 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 28.00 0.69 0.06 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 53.00 1.31 0.11 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 54.00 1.34 0.11 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 181.00 4.48 0.38 98.37 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 45.00 1.11 0.10 50.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 79.00 1.96 0.17 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 1046.00 22.79 2.21 47.29 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 220.00 4.79 0.47 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 111.00 2.48 0.23 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 47.00 0.40 0.10 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 3.00 0.03 0.01 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 152.00 1.29 0.32 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 7274.00 61.51 15.40 78.46 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 88.00 0.74 0.19 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 83.00 2.23 0.18 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 513.00 16.32 1.09 52.83 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 18.00 0.54 0.04 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 678.00 28.92 1.44 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA occipital lobe (Tissue)