ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 1572.00 6.25 3.33 78.99 ENST00000823279 lncRNA occipital lobe (Tissue)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 1194.10 4.75 2.53 39.55 ENST00000823279 lncRNA occipital lobe (Tissue)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 2507.55 9.97 5.31 62.35 ENST00000823801 lncRNA occipital lobe (Tissue)
ENST00000827714.1 ENST00000827714.1_110_129_+ 110–129 335.00 58.67 0.71 65.69 ENST00000827714 lncRNA occipital lobe (Tissue)
ENST00000827714.1 ENST00000827714.1_110_131_+ 110–131 175.00 30.65 0.37 34.31 ENST00000827714 lncRNA occipital lobe (Tissue)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 1565.00 3.28 3.31 100.0 GAS5-377 lncRNA occipital lobe (Tissue)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 97.00 0.20 0.21 100.0 GAS5-377 lncRNA occipital lobe (Tissue)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 664.00 1.39 1.41 100.0 GAS5-377 lncRNA occipital lobe (Tissue)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 44153.00 92.57 93.47 100.0 GAS5-377 lncRNA occipital lobe (Tissue)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 138.00 11.61 0.29 100.0 TAF12-DT-204 lncRNA occipital lobe (Tissue)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 302438.00 97.11 640.22 99.67 ZFAS1-238 lncRNA occipital lobe (Tissue)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 338.00 0.11 0.72 100.0 ZFAS1-238 lncRNA occipital lobe (Tissue)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 1195.00 0.38 2.53 100.0 ZFAS1-238 lncRNA occipital lobe (Tissue)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 1024.00 0.33 2.17 100.0 ZFAS1-238 lncRNA occipital lobe (Tissue)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 5151.00 9.56 10.90 100.0 ZFAS1-242 lncRNA occipital lobe (Tissue)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 47323.00 87.84 100.18 100.0 ZFAS1-242 lncRNA occipital lobe (Tissue)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 53.00 43.09 0.11 100.0 ENST00000837997 lncRNA occipital lobe (Tissue)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 16.00 13.01 0.03 100.0 ENST00000837997 lncRNA occipital lobe (Tissue)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 2542.00 71.03 5.38 80.83 ENST00000839036 lncRNA occipital lobe (Tissue)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 27.00 19.71 0.06 100.0 ENST00000849527 lncRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 3561.00 59.80 7.54 70.68 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 15.00 0.25 0.03 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 1265.00 0.25 2.68 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 553.00 39.78 1.17 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA occipital lobe (Tissue)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 541.00 38.92 1.15 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA occipital lobe (Tissue)