ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362441.1 ENST00000362441.1_2_82_+ 2–82 16082.00 38.68 34.04 100.0 SNORD115-34-201 snoRNA occipital lobe (Tissue)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 37.00 6.21 0.08 100.0 RNU5E-1-201 snRNA occipital lobe (Tissue)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 1.00 0.06 0.00 16.67 RNA5SP370-201 rRNA pseudogene occipital lobe (Tissue)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 10.00 16.39 0.02 100.0 SNORA31-201 snoRNA occipital lobe (Tissue)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 4.00 0.26 0.01 100.0 RNA5SP389-201 rRNA pseudogene occipital lobe (Tissue)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 45.00 2.87 0.10 83.33 RNA5SP389-201 rRNA pseudogene occipital lobe (Tissue)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 8.00 0.51 0.02 80.0 RNA5SP389-201 rRNA pseudogene occipital lobe (Tissue)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 7.00 0.45 0.01 100.0 RNA5SP389-201 rRNA pseudogene occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 121.00 1.06 0.26 100.0 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 1431.00 12.48 3.03 79.9 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 1064.29 9.29 2.25 42.52 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 349.00 3.04 0.74 75.87 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 283.00 2.47 0.60 60.86 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 45.00 0.39 0.10 100.0 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 95.00 0.83 0.20 52.78 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 491.00 4.28 1.04 38.09 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 151.28 1.32 0.32 56.66 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 193.00 1.68 0.41 47.65 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 714.00 6.23 1.51 82.73 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 386.00 3.37 0.82 100.0 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 1604.72 14.00 3.40 66.72 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 132.89 1.16 0.28 38.08 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 152.00 1.33 0.32 82.16 RNU5A-1-201 snRNA occipital lobe (Tissue)
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 1622.00 86.28 3.43 100.0 SNORD114-14-201 snoRNA occipital lobe (Tissue)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 105.00 3.59 0.22 100.0 SNORD104-201 snoRNA occipital lobe (Tissue)