ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668505.1 ENST00000668505.1_1278_1315_+ 1278–1315 90.00 0.03 0.19 100.0 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_1279_1308_+ 1279–1308 2007.00 0.69 4.25 100.0 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 30.00 0.01 0.06 100.0 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_1272_1352_+ 1272–1352 3.00 0.00 0.01 100.0 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1361_+ 1278–1361 4157.00 1.43 8.80 98.86 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000669673.1 ENST00000669673.1_3794_3884_+ 3794–3884 2752.00 4.44 5.83 53.3 SNHG14-323 lncRNA occipital lobe (Tissue)
ENST00000670680.1 ENST00000670680.1_34_69_+ 34–69 291.00 0.21 0.62 61.52 MEG8-251 lncRNA occipital lobe (Tissue)
ENST00000670680.1 ENST00000670680.1_2_69_+ 2–69 134329.00 94.64 284.36 98.59 MEG8-251 lncRNA occipital lobe (Tissue)
ENST00000670680.1 ENST00000670680.1_36_69_+ 36–69 289.00 0.20 0.61 52.64 MEG8-251 lncRNA occipital lobe (Tissue)
ENST00000670680.1 ENST00000670680.1_1539_1602_+ 1539–1602 2592.00 1.83 5.49 84.65 MEG8-251 lncRNA occipital lobe (Tissue)
ENST00000670680.1 ENST00000670680.1_10_70_+ 10–70 30.00 0.02 0.06 100.0 MEG8-251 lncRNA occipital lobe (Tissue)
ENST00000670697.1 ENST00000670697.1_232_313_+ 232–313 14144.00 27.56 29.94 47.2 SNHG14-336 lncRNA occipital lobe (Tissue)
ENST00000670697.1 ENST00000670697.1_233_310_+ 233–310 34497.00 67.22 73.03 89.29 SNHG14-336 lncRNA occipital lobe (Tissue)
ENST00000671491.1 ENST00000671491.1_1778_1868_+ 1778–1868 28736.00 78.90 60.83 94.51 SNHG14-341 lncRNA occipital lobe (Tissue)
ENST00000676514.1 ENST00000676514.1_1978_2054_+ 1978–2054 741.00 30.18 1.57 100.0 NCL-211 retained intron occipital lobe (Tissue)
ENST00000679646.1 ENST00000679646.1_899_921_+ 899–921 460.00 4.35 0.97 100.0 FMN2-209 protein coding CDS not defined occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1421_+ 1409–1421 95.00 1.87 0.20 34.42 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1423_+ 1409–1423 181.00 3.56 0.38 65.58 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1449_1480_+ 1449–1480 7.00 0.14 0.01 100.0 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1421_1436_+ 1421–1436 631.00 12.41 1.34 100.0 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1409_1440_+ 1409–1440 673.00 13.24 1.42 100.0 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685142.3 ENST00000685142.3_1405_1444_+ 1405–1444 267.00 5.25 0.57 100.0 LINC02739-203 lncRNA occipital lobe (Tissue)
ENST00000685227.3 ENST00000685227.3_1036_1055_+ 1036–1055 54798.00 86.89 116.00 100.0 MIR124-1HG-216 lncRNA occipital lobe (Tissue)
ENST00000685307.3 ENST00000685307.3_1198_1226_+ 1198–1226 203.00 18.92 0.43 100.0 SNHG10-212 lncRNA occipital lobe (Tissue)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1.44 0.00 0.00 72.05 SNHG19-202 lncRNA occipital lobe (Tissue)