ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 27925.00 0.91 59.11 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 330.00 0.01 0.70 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1917.00 0.06 4.06 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 40165.00 1.30 85.02 67.51 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_2507_2560_+ 2507–2560 597.00 0.02 1.26 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 419215.00 13.60 887.42 98.21 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 1044.00 0.03 2.21 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 302.00 0.01 0.64 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_806_874_+ 806–874 147205.00 4.77 311.61 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 914.00 0.03 1.93 72.77 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 395.17 0.01 0.84 52.2 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 21.00 0.00 0.04 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 867.00 0.03 1.84 55.97 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 630.00 0.02 1.33 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 780.00 0.03 1.65 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1265_+ 1194–1265 774.00 0.03 1.64 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668419.1 ENST00000668419.1_3471_3561_+ 3471–3561 284846.00 39.86 602.98 100.0 SNHG14-315 lncRNA occipital lobe (Tissue)
ENST00000668419.1 ENST00000668419.1_1471_1561_+ 1471–1561 154707.00 21.65 327.49 92.51 SNHG14-315 lncRNA occipital lobe (Tissue)
ENST00000668419.1 ENST00000668419.1_2_92_+ 2–92 214239.00 29.98 453.51 89.61 SNHG14-315 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 1916.00 0.66 4.06 100.0 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 110148.00 37.76 233.17 45.83 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 191.00 0.07 0.40 100.0 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 176.00 0.06 0.37 100.0 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 148456.36 50.89 314.26 57.31 SNHG5-273 lncRNA occipital lobe (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 13478.00 4.62 28.53 89.1 SNHG5-273 lncRNA occipital lobe (Tissue)