ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 78.00 3.17 0.17 100.0 ENST00000666735 lncRNA occipital lobe (Tissue)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 514.00 20.92 1.09 100.0 ENST00000666735 lncRNA occipital lobe (Tissue)
ENST00000666972.1 ENST00000666972.1_2488_2551_+ 2488–2551 2621.00 80.77 5.55 100.0 MEG8-242 lncRNA occipital lobe (Tissue)
ENST00000667788.1 ENST00000667788.1_3_90_+ 3–90 16650.11 24.42 35.25 28.19 SNHG14-312 lncRNA occipital lobe (Tissue)
ENST00000667788.1 ENST00000667788.1_2_92_+ 2–92 42364.02 62.13 89.68 71.72 SNHG14-312 lncRNA occipital lobe (Tissue)
ENST00000667788.1 ENST00000667788.1_16_92_+ 16–92 414.00 0.61 0.88 100.0 SNHG14-312 lncRNA occipital lobe (Tissue)
ENST00000667814.1 ENST00000667814.1_36_68_+ 36–68 129.00 0.40 0.27 100.0 MEG8-244 lncRNA occipital lobe (Tissue)
ENST00000667814.1 ENST00000667814.1_2_32_+ 2–32 231.00 0.72 0.49 100.0 MEG8-244 lncRNA occipital lobe (Tissue)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 31401.00 97.49 66.47 99.9 MEG8-244 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 639.00 0.02 1.35 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 14.00 0.00 0.03 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 6872.00 0.22 14.55 99.35 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 331.62 0.01 0.70 43.81 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 1840.00 0.06 3.90 87.41 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 1664792.00 53.99 3524.13 99.29 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 1202.00 0.04 2.54 70.91 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 62262.00 2.02 131.80 99.54 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 9269.00 0.30 19.62 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_2496_2560_+ 2496–2560 569421.00 18.47 1205.38 99.87 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 401.00 0.01 0.85 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 2385.00 0.08 5.05 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 1779.00 0.06 3.77 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_1194_1268_+ 1194–1268 1112.00 0.04 2.35 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 309.00 0.01 0.65 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 429.00 0.01 0.91 100.0 SNHG1-248 lncRNA occipital lobe (Tissue)