ENCFF001RME

Library Details

Organism: Homo Sapiens
Biosample: occipital lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AFX
Description: Part of ENCODE experiment ENCSR000AFX. The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 464.00 87.22 0.98 100.0 MIR301A-201 miRNA occipital lobe (Tissue)
ENST00000385274.1 ENST00000385274.1_55_77_+ 55–77 4094.00 18.36 8.67 32.82 MIR130A-201 miRNA occipital lobe (Tissue)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 18035.00 80.88 38.18 94.1 MIR130A-201 miRNA occipital lobe (Tissue)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 420867.00 98.56 890.91 99.29 MIRLET7F2-201 miRNA occipital lobe (Tissue)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 308.00 69.21 0.65 100.0 MIR652-201 miRNA occipital lobe (Tissue)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 1.00 100.00 0.00 100.0 MIR653-201 miRNA occipital lobe (Tissue)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 865.00 60.74 1.83 100.0 MIR140-201 miRNA occipital lobe (Tissue)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 582.00 23.06 1.23 100.0 MIR106B-201 miRNA occipital lobe (Tissue)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 454.00 17.99 0.96 70.72 MIR106B-201 miRNA occipital lobe (Tissue)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 15225.00 25.20 32.23 95.86 SNORD83A-201 snoRNA occipital lobe (Tissue)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 43784.00 72.48 92.68 98.81 SNORD83A-201 snoRNA occipital lobe (Tissue)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 636.00 75.00 1.35 100.0 SNORD41-201 snoRNA occipital lobe (Tissue)
ENST00000387314.1 ENST00000387314.1_41_56_+ 41–56 43.00 3.01 0.09 76.79 MT-TF-201 Mt tRNA occipital lobe (Tissue)
ENST00000387314.1 ENST00000387314.1_1_54_+ 1–54 5.00 0.35 0.01 100.0 MT-TF-201 Mt tRNA occipital lobe (Tissue)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 5.00 0.35 0.01 100.0 MT-TF-201 Mt tRNA occipital lobe (Tissue)
ENST00000387342.1 ENST00000387342.1_1_53_+ 1–53 477.00 11.14 1.01 100.0 MT-TV-201 Mt tRNA occipital lobe (Tissue)
ENST00000387347.2 ENST00000387347.2_1132_1147_+ 1132–1147 78.00 0.19 0.17 100.0 MT-RNR2-201 Mt rRNA occipital lobe (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1531_+ 1500–1531 10615.00 25.86 22.47 96.35 MT-RNR2-201 Mt rRNA occipital lobe (Tissue)
ENST00000387347.2 ENST00000387347.2_74_96_+ 74–96 222.00 0.54 0.47 100.0 MT-RNR2-201 Mt rRNA occipital lobe (Tissue)
ENST00000387347.2 ENST00000387347.2_1357_1376_+ 1357–1376 200.00 0.49 0.42 100.0 MT-RNR2-201 Mt rRNA occipital lobe (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1528_+ 1500–1528 11332.00 27.61 23.99 81.09 MT-RNR2-201 Mt rRNA occipital lobe (Tissue)
ENST00000387347.2 ENST00000387347.2_1500_1559_+ 1500–1559 544.00 1.33 1.15 100.0 MT-RNR2-201 Mt rRNA occipital lobe (Tissue)
ENST00000387347.2 ENST00000387347.2_1297_1329_+ 1297–1329 19.00 0.05 0.04 100.0 MT-RNR2-201 Mt rRNA occipital lobe (Tissue)
ENST00000387365.1 ENST00000387365.1_1_51_+ 1–51 331.00 14.90 0.70 84.65 MT-TI-201 Mt tRNA occipital lobe (Tissue)
ENST00000387365.1 ENST00000387365.1_1_58_+ 1–58 550.00 24.76 1.16 100.0 MT-TI-201 Mt tRNA occipital lobe (Tissue)