ENCFF001RMD

Library Details

Organism: Homo Sapiens
Biosample: uterus (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGH
Description: Part of ENCODE experiment ENCSR000AGH. The libraries contained in this experiment come from human fetal uterus tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 5653.00 0.65 9.35 63.81 RPL13A-212 retained intron uterus (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 692814.00 79.77 1146.13 98.71 RPL13A-212 retained intron uterus (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 2320.00 0.27 3.84 100.0 RPL13A-212 retained intron uterus (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 25.00 0.00 0.04 100.0 RPL13A-212 retained intron uterus (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 60716.00 6.99 100.44 83.68 RPL13A-212 retained intron uterus (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 1455.00 0.17 2.41 100.0 RPL13A-212 retained intron uterus (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 10540.00 1.21 17.44 100.0 RPL13A-212 retained intron uterus (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 61.00 0.01 0.10 100.0 RPL13A-212 retained intron uterus (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 2365.00 12.42 3.91 100.0 RPL7A-207 protein coding CDS not defined uterus (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 10274.00 53.94 17.00 92.48 RPL7A-207 protein coding CDS not defined uterus (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 433.00 2.27 0.72 100.0 RPL7A-207 protein coding CDS not defined uterus (Tissue)
ENST00000489392.1 ENST00000489392.1_110_189_+ 110–189 1.00 0.01 0.00 100.0 RPL7A-207 protein coding CDS not defined uterus (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 255.00 2.06 0.42 44.58 RN7SL2-201 misc RNA uterus (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 600.00 4.86 0.99 100.0 RN7SL2-201 misc RNA uterus (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 5141.00 5.57 8.50 83.19 NOP56-217 protein coding CDS not defined uterus (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 64687.00 70.04 107.01 79.64 NOP56-217 protein coding CDS not defined uterus (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 1003.00 0.71 1.66 40.2 RABGGTB-213 protein coding CDS not defined uterus (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 879.00 0.62 1.45 100.0 RABGGTB-213 protein coding CDS not defined uterus (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 514.00 0.36 0.85 100.0 RABGGTB-213 protein coding CDS not defined uterus (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 1492.00 1.05 2.47 59.8 RABGGTB-213 protein coding CDS not defined uterus (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 60549.00 42.74 100.17 86.61 RABGGTB-213 protein coding CDS not defined uterus (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 57142.00 40.33 94.53 98.58 RABGGTB-213 protein coding CDS not defined uterus (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 70.00 0.05 0.12 100.0 RABGGTB-213 protein coding CDS not defined uterus (Tissue)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1.00 0.00 0.00 100.0 RABGGTB-213 protein coding CDS not defined uterus (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 11160.00 62.08 18.46 100.0 GNL3-211 retained intron uterus (Tissue)