ENCFF001RMC

Library Details

Organism: Homo Sapiens
Biosample: temporal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGD
Description: Part of ENCODE experiment ENCSR000AGD. The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 1110.00 2.11 2.27 100.0 RPL17-214 retained intron temporal lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 19659.29 37.39 40.24 47.34 RPL17-214 retained intron temporal lobe (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 26820.66 51.01 54.90 57.7 RPL17-214 retained intron temporal lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 452.00 0.18 0.93 100.0 SNORD43-201 snoRNA temporal lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 243264.00 96.27 497.90 99.97 SNORD43-201 snoRNA temporal lobe (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 507.00 0.20 1.04 100.0 SNORD43-201 snoRNA temporal lobe (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 585.00 33.70 1.20 100.0 MIR151B-201 miRNA temporal lobe (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 1012.00 3.75 2.07 100.0 SNORD3A-201 snoRNA temporal lobe (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 28798.00 85.18 58.94 100.0 SNORD92-201 snoRNA temporal lobe (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 10835.00 71.85 22.18 100.0 NSRP1-214 protein coding temporal lobe (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 2308.00 15.31 4.72 75.18 NSRP1-214 protein coding temporal lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 8.00 0.10 0.02 100.0 MIR23AHG-201 lncRNA temporal lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 2110.00 27.05 4.32 91.78 MIR23AHG-201 lncRNA temporal lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 1945.00 24.93 3.98 90.97 MIR23AHG-201 lncRNA temporal lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1549.00 19.86 3.17 81.31 MIR23AHG-201 lncRNA temporal lobe (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 986.00 12.64 2.02 63.9 MIR23AHG-201 lncRNA temporal lobe (Tissue)
ENST00000590797.5 ENST00000590797.5_2254_2275_+ 2254–2275 2.00 11.76 0.00 100.0 MIR122HG-201 lncRNA temporal lobe (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 44.00 36.97 0.09 100.0 ODAD3-204 nonsense mediated decay temporal lobe (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 129.00 0.42 0.26 100.0 VMP1-217 retained intron temporal lobe (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 3.00 0.01 0.01 100.0 VMP1-217 retained intron temporal lobe (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 16984.00 55.74 34.76 61.35 VMP1-217 retained intron temporal lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 432.00 0.05 0.88 100.0 C19orf48P-203 retained intron temporal lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 705552.21 75.67 1444.08 84.01 C19orf48P-203 retained intron temporal lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 214305.90 22.99 438.63 23.86 C19orf48P-203 retained intron temporal lobe (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 2823.00 0.30 5.78 84.12 C19orf48P-203 retained intron temporal lobe (Tissue)