ENCFF001RMC

Library Details

Organism: Homo Sapiens
Biosample: temporal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGD
Description: Part of ENCODE experiment ENCSR000AGD. The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 146313.00 99.38 299.47 99.76 MIR22HG-212 lncRNA temporal lobe (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 330.00 0.25 0.68 55.56 SNORD53B-201 snoRNA temporal lobe (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 264.00 0.20 0.54 44.44 SNORD53B-201 snoRNA temporal lobe (Tissue)
ENST00000577887.1 ENST00000577887.1_1_76_+ 1–76 117919.00 90.11 241.35 94.6 SNORD53B-201 snoRNA temporal lobe (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 1577.00 95.69 3.23 100.0 ENST00000578036 lncRNA temporal lobe (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 3793.00 76.81 7.76 100.0 RPL23A-207 protein coding temporal lobe (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 2571.00 86.10 5.26 100.0 MIR744-201 miRNA temporal lobe (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 52.00 72.22 0.11 100.0 MIR378C-201 miRNA temporal lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1227.00 65.41 2.51 75.14 MIR142HG-201 lncRNA temporal lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 8.00 0.43 0.02 100.0 MIR142HG-201 lncRNA temporal lobe (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 92.00 4.90 0.19 14.24 MIR142HG-201 lncRNA temporal lobe (Tissue)
ENST00000580533.1 ENST00000580533.1_1_91_+ 1–91 453.00 1.81 0.93 100.0 SNORD3C-201 snoRNA temporal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 38.24 0.03 0.08 73.54 RPL23A-208 retained intron temporal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 8.99 0.01 0.02 39.09 RPL23A-208 retained intron temporal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 89181.00 77.39 182.53 91.93 RPL23A-208 retained intron temporal lobe (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 22411.00 19.45 45.87 90.54 RPL23A-208 retained intron temporal lobe (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 5.00 1.67 0.01 100.0 MIR133A1HG-202 lncRNA temporal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 169.00 0.11 0.35 100.0 RPL17-211 retained intron temporal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 8371.00 5.43 17.13 44.86 RPL17-211 retained intron temporal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 21613.00 14.02 44.24 54.14 RPL17-211 retained intron temporal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 67368.00 43.71 137.89 91.92 RPL17-211 retained intron temporal lobe (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 43218.00 28.04 88.46 95.7 RPL17-211 retained intron temporal lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 7789.00 58.53 15.94 73.65 ENST00000582320 lncRNA temporal lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 931.00 7.00 1.91 100.0 ENST00000582320 lncRNA temporal lobe (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 748.00 5.62 1.53 100.0 ENST00000582320 lncRNA temporal lobe (Tissue)