ENCFF001RMC

Library Details

Organism: Homo Sapiens
Biosample: temporal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGD
Description: Part of ENCODE experiment ENCSR000AGD. The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000488946.1 ENST00000488946.1_1357_1443_+ 1357–1443 1.00 0.00 0.00 100.0 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 206.00 0.06 0.42 100.0 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_1364_1441_+ 1364–1441 1253.00 0.39 2.56 70.91 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_804_886_+ 804–886 13145.00 4.07 26.90 80.34 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 611.00 0.19 1.25 100.0 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_1363_1444_+ 1363–1444 2621.00 0.81 5.36 100.0 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_116_191_+ 116–191 4170.00 43.31 8.53 86.82 RPL7A-207 protein coding CDS not defined temporal lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 398.00 4.13 0.81 100.0 RPL7A-207 protein coding CDS not defined temporal lobe (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 1007.00 10.46 2.06 100.0 RPL7A-207 protein coding CDS not defined temporal lobe (Tissue)
ENST00000490232.3 ENST00000490232.3_219_300_+ 219–300 1927.00 6.03 3.94 100.0 RN7SL2-201 misc RNA temporal lobe (Tissue)
ENST00000490232.3 ENST00000490232.3_229_300_+ 229–300 981.00 3.07 2.01 53.61 RN7SL2-201 misc RNA temporal lobe (Tissue)
ENST00000494697.5 ENST00000494697.5_274_348_+ 274–348 16482.00 62.36 33.73 82.28 NOP56-217 protein coding CDS not defined temporal lobe (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 2764.00 10.46 5.66 92.26 NOP56-217 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 340.00 0.64 0.70 56.95 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_552_+ 471–552 26944.00 50.42 55.15 89.69 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 13724.00 25.68 28.09 96.83 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_465_553_+ 465–553 1.00 0.00 0.00 100.0 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 257.00 0.48 0.53 43.05 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 525.00 0.98 1.07 100.0 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 68.00 0.13 0.14 100.0 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 367.00 0.69 0.75 100.0 RABGGTB-213 protein coding CDS not defined temporal lobe (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 5872.00 10.99 12.02 100.0 GNL3-211 retained intron temporal lobe (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 38232.00 71.57 78.25 100.0 GNL3-211 retained intron temporal lobe (Tissue)
ENST00000497519.1 ENST00000497519.1_681_769_+ 681–769 12096.00 74.33 24.76 100.0 RPL5-205 retained intron temporal lobe (Tissue)
ENST00000497519.1 ENST00000497519.1_675_769_+ 675–769 1.00 0.01 0.00 100.0 RPL5-205 retained intron temporal lobe (Tissue)