ENCFF001RMC

Library Details

Organism: Homo Sapiens
Biosample: temporal lobe (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR000AGD
Description: Part of ENCODE experiment ENCSR000AGD. The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 85367.00 10.08 174.72 64.6 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 222.00 0.03 0.45 100.0 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 374.00 0.04 0.77 100.0 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 1536.00 0.18 3.14 63.34 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 4420.00 0.52 9.05 80.82 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 72568.00 8.57 148.53 87.16 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 509598.00 60.17 1043.02 93.26 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 2652.00 0.31 5.43 100.0 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 6167.00 0.73 12.62 51.18 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_343_434_+ 343–434 3.00 0.00 0.01 100.0 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 1772.00 0.21 3.63 100.0 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 19976.00 2.36 40.89 67.81 EIF4A2-219 retained intron temporal lobe (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 55888.00 93.55 114.39 100.0 RPS8-207 protein coding CDS not defined temporal lobe (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 279.00 8.59 0.57 100.0 RPL7A-206 protein coding CDS not defined temporal lobe (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 521.00 16.04 1.07 100.0 RPL7A-206 protein coding CDS not defined temporal lobe (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 801.00 24.66 1.64 100.0 RPL7A-206 protein coding CDS not defined temporal lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 101355.00 5.55 207.45 98.46 RPL21-209 retained intron temporal lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 1690111.00 92.55 3459.22 99.66 RPL21-209 retained intron temporal lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 6884.00 0.38 14.09 100.0 RPL21-209 retained intron temporal lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 3454.00 0.19 7.07 100.0 RPL21-209 retained intron temporal lobe (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1981.00 0.11 4.05 100.0 RPL21-209 retained intron temporal lobe (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 62.00 32.29 0.13 100.0 GABRE-209 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_155_235_+ 155–235 256645.00 79.48 525.29 97.62 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_148_235_+ 148–235 10.00 0.00 0.02 100.0 RPL13A-212 retained intron temporal lobe (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 16.00 0.00 0.03 100.0 RPL13A-212 retained intron temporal lobe (Tissue)